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Items: 1 to 20 of 35

1.

Combined analysis of ATAC-Seq and RNA-Seq reveal a potential role of WRKY34 in tomato response to cold stress [ATAC]

(Submitter supplied) To further clarify the differences in the potential regulatory mechanisms of cold tolerance between wild and cultivated tomatoes, we subjected cold-sensitive cultivated tomato (Solanum lycopersicum) Ailsa Craig (AC) and cold-tolerant wild tomato (S. habrochaites) LA1777 to cold stress for 6 h, and performed ATAC-Seq and RNA-Seq, respectively.
Organism:
Solanum lycopersicum; Solanum habrochaites
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL27957 GPL34161
8 Samples
Download data: BW
Series
Accession:
GSE254893
ID:
200254893
2.

Next Generation Sequencing of tomato germplasm for cold tolerance and yield studies

(Submitter supplied) Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goal of this study is genome wide association mapping for cold tolerance and yield studies in tomato (Solanum spp.) by phenotyping the genotypes under six diffrent temporal arrangments. Also for conducting quantitative reverse transcription polymerase chain reaction (qRT–PCR) assay of cold tolerant genes.
Organism:
Solanum chilense; Solanum lycopersicum var. cerasiforme; Solanum lycopersicum; Solanum habrochaites; Solanum peruvianum; Solanum pimpinellifolium
Type:
Genome variation profiling by high throughput sequencing
6 related Platforms
50 Samples
Download data: VCF
Series
Accession:
GSE200034
ID:
200200034
3.

Mechanisms of RNA virus induced plant death

(Submitter supplied) The changes of small RNA profile have been studied in tomato and wild tomato plants to understand the host reponse to the infection of a non-coding viral RNA infection.
Organism:
Solanum habrochaites; Solanum lycopersicum; Solanum lycopersicum x Solanum habrochaites
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL23877 GPL23878 GPL19694
8 Samples
Download data: CSV
Series
Accession:
GSE102373
ID:
200102373
4.

Microarray Expression profiling of susceptible (CO-3) and resistant (EC-520061) genotype of tomato in response to Early Blight pathogen after 24hrs of inoculation

(Submitter supplied) A comparative study ware made to know the Early Blight resistance mechanism between resistant and susceptible plants at vegetative stage. Transcriptional changes during compatible and resistant reaction between A. solani and tomato genotypes have been identified using Affymetrix tomato gene chips. Results were confirmed by reverse transcription-polymerase chain reaction with the samples collected after 24hrs of inoculation from inoculated and control susceptible and resistant genotypes. more...
Organism:
Solanum lycopersicum; Solanum habrochaites
Type:
Expression profiling by array
Platform:
GPL4741
12 Samples
Download data: CEL
Series
Accession:
GSE71428
ID:
200071428
5.

Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis

(Submitter supplied) To identify tomato miRNAs involved in chilling response, two small RNA libraries and two degradome libraries from chilling-treated(4°C/4°C for 1h,4h, 8h, 12h, 24h and 48h) and non-chilling-treated (25°C/20°C for 1h,4h, 8h, 12h, 24h and 48h)leaves of LA1777’ (S. habrochaites) seedlings were constructed. A total of 4342604 and 7231609 clean reads were obtained by high-throughput sequencing of the two libraries, respectively. more...
Organism:
Solanum habrochaites
Type:
Non-coding RNA profiling by high throughput sequencing; Other
Platform:
GPL18655
4 Samples
Download data: TXT
Series
Accession:
GSE57335
ID:
200057335
6.

Transcriptome Sequencing in wild and domesticated tomato species

(Submitter supplied) RNA-seq of seedlings of four tomato species Solanum habrochaites, Solanum lycopersicum, Solanum pimpinelliolium, and Solanum pennellii. An additional panel of samples include many tissues from Solanum lycopersicum and Solanum pennellii in two light conditions
Organism:
Solanum pimpinellifolium; Solanum pennellii; Solanum habrochaites; Solanum lycopersicum
Type:
Expression profiling by high throughput sequencing
4 related Platforms
52 Samples
Download data: TXT
Series
Accession:
GSE45774
ID:
200045774
7.

Illumina NovaSeq 6000 (Solanum habrochaites)

Organism:
Solanum habrochaites
1 Series
4 Samples
Download data
Platform
Accession:
GPL34161
ID:
100034161
8.

Illumina HiSeq 2500 (Solanum habrochaites)

Organism:
Solanum habrochaites
2 Series
4 Samples
Download data
Platform
Accession:
GPL23877
ID:
100023877
9.

Illumina Genome Analyzer IIx (Solanum habrochaites)

Organism:
Solanum habrochaites
1 Series
4 Samples
Download data
Platform
Accession:
GPL18655
ID:
100018655
10.

Illumina Genome Analyzer II (Solanum habrochaites)

Organism:
Solanum habrochaites
1 Series
7 Samples
Download data
Platform
Accession:
GPL16959
ID:
100016959
11.

L1777_25_2

Organism:
Solanum habrochaites
Source name:
leaves
Platform:
GPL34161
Series:
GSE254893
Download data: BW
Sample
Accession:
GSM8059881
ID:
308059881
12.

L1777_25_1

Organism:
Solanum habrochaites
Source name:
leaves
Platform:
GPL34161
Series:
GSE254893
Download data: BW
Sample
Accession:
GSM8059880
ID:
308059880
13.

L1777_4_2

Organism:
Solanum habrochaites
Source name:
leaves
Platform:
GPL34161
Series:
GSE254893
Download data: BW
Sample
Accession:
GSM8059879
ID:
308059879
14.

L1777_4_1

Organism:
Solanum habrochaites
Source name:
leaves
Platform:
GPL34161
Series:
GSE254893
Download data: BW
Sample
Accession:
GSM8059878
ID:
308059878
15.

H-88-78-1

Organism:
Solanum habrochaites
Source name:
Leaf
Platform:
GPL23877
Series:
GSE200034
Download data
Sample
Accession:
GSM6005067
ID:
306005067
16.

S Habrochaitis, FnyCMV

Organism:
Solanum habrochaites
Source name:
shoot apex
Platform:
GPL23877
Series:
GSE102373
Download data: CSV
Sample
Accession:
GSM2735616
ID:
302735616
17.

S Habrochaitis, FnyCMV-D

Organism:
Solanum habrochaites
Source name:
shoot apex
Platform:
GPL23877
Series:
GSE102373
Download data: CSV
Sample
Accession:
GSM2735614
ID:
302735614
18.

S Habrochaitis, healthy

Organism:
Solanum habrochaites
Source name:
shoot apex
Platform:
GPL23877
Series:
GSE102373
Download data: CSV
Sample
Accession:
GSM2735610
ID:
302735610
19.

Early Blight Resistant Treated-3

Organism:
Solanum habrochaites
Source name:
Resistant plant leaf at vegetative stage chalenged with fungal spore
Platform:
GPL4741
Series:
GSE71428
Download data: CEL
Sample
Accession:
GSM1834109
ID:
301834109
20.

Early Blight Resistant Treated-2

Organism:
Solanum habrochaites
Source name:
Resistant plant leaf at vegetative stage chalenged with fungal spore
Platform:
GPL4741
Series:
GSE71428
Download data: CEL
Sample
Accession:
GSM1834108
ID:
301834108
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