txid62890[Organism:noexp] - GEO DataSets

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Select item 2002000341.

Next Generation Sequencing of tomato germplasm for cold tolerance and yield studies

(Submitter supplied) Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goal of this study is genome wide association mapping for cold tolerance and yield studies in tomato (Solanum spp.) by phenotyping the genotypes under six diffrent temporal arrangments. Also for conducting quantitative reverse transcription polymerase chain reaction (qRT–PCR) assay of cold tolerant genes.

Organism:: Solanum lycopersicum; Solanum habrochaites; Solanum chilense; Solanum lycopersicum var. cerasiforme; Solanum peruvianum; Solanum pimpinellifolium

Type:: Genome variation profiling by high throughput sequencing

6 related Platforms
50 Samples

Download data: VCF

Series

Accession:: GSE200034

ID:: 200200034

Select item 2001023732.

Mechanisms of RNA virus induced plant death

(Submitter supplied) The changes of small RNA profile have been studied in tomato and wild tomato plants to understand the host reponse to the infection of a non-coding viral RNA infection.

Organism:: Solanum habrochaites; Solanum lycopersicum; Solanum lycopersicum x Solanum habrochaites

Type:: Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL23878 GPL23877 GPL19694
8 Samples

Download data: CSV

Series

Accession:: GSE102373

ID:: 200102373

SRA Run Selector

Select item 2000714283.

Microarray Expression profiling of susceptible (CO-3) and resistant (EC-520061) genotype of tomato in response to Early Blight pathogen after 24hrs of inoculation

(Submitter supplied) A comparative study ware made to know the Early Blight resistance mechanism between resistant and susceptible plants at vegetative stage. Transcriptional changes during compatible and resistant reaction between A. solani and tomato genotypes have been identified using Affymetrix tomato gene chips. Results were confirmed by reverse transcription-polymerase chain reaction with the samples collected after 24hrs of inoculation from inoculated and control susceptible and resistant genotypes. more...

Organism:: Solanum lycopersicum; Solanum habrochaites

Type:: Expression profiling by array

Platform:: GPL4741
12 Samples

Download data: CEL

Series

Accession:: GSE71428

ID:: 200071428

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000573354.

Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis

(Submitter supplied) To identify tomato miRNAs involved in chilling response, two small RNA libraries and two degradome libraries from chilling-treated(4°C/4°C for 1h，4h, 8h, 12h, 24h and 48h) and non-chilling-treated (25°C/20°C for 1h，4h, 8h, 12h, 24h and 48h)leaves of LA1777’ (S. habrochaites) seedlings were constructed. A total of 4342604 and 7231609 clean reads were obtained by high-throughput sequencing of the two libraries, respectively. more...

Organism:: Solanum habrochaites

Type:: Non-coding RNA profiling by high throughput sequencing; Other

Platform:: GPL18655
4 Samples

Download data: TXT

Series

Accession:: GSE57335

ID:: 200057335

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000457745.

Transcriptome Sequencing in wild and domesticated tomato species

(Submitter supplied) RNA-seq of seedlings of four tomato species Solanum habrochaites, Solanum lycopersicum, Solanum pimpinelliolium, and Solanum pennellii. An additional panel of samples include many tissues from Solanum lycopersicum and Solanum pennellii in two light conditions