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Items: 1 to 20 of 116

1.

Transcriptomic clock predicts vascular changes of prodromal diabetic retinopathy

(Submitter supplied) We performed RNA-Seq on fresh whole retinal vasculature from 28 Nile rats with a large dynamic range of acellular capillary density (ACD).
Organism:
Arvicanthis niloticus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL32935
28 Samples
Download data: TXT
Series
Accession:
GSE220672
ID:
200220672
2.

Mammalian Methylation Consortium

(Submitter supplied) The Mammalian Methylation Consortium aimed to characterize the relationship between cytosine methylation levels and a) species characteristics such as maximum lifespan and b) individual sample characteristics such as age, sex, tissue type. Both supervised machine learning approaches and unsupervised machine learning approaches were applied to the data as described in the citations. To facilitate comparative analyses across species, the mammalian methylation consortium applied a single measurement platform (the mammalian methylation array, GPL28271) to n=15216 DNA samples derived from 70 tissue types of 348 different mammalian species (331 eutherian-, 15 marsupial-, and 2 monotreme species). more...
Organism:
Osphranter robustus; Bradypus variegatus; Echinops telfairi; Blarina brevicauda; Desmodus rotundus; Pan troglodytes; Lycaon pictus; Vulpes vulpes; Felis catus; Zalophus californianus; Orcinus orca; Tursiops truncatus; Balaenoptera borealis; Balaenoptera musculus; Trichechus manatus; Equus grevyi; Sus scrofa; Giraffa camelopardalis; Capra hircus; Ovis aries; Tragelaphus strepsiceros; Oryctolagus cuniculus; Marmota monax; Cricetulus griseus; Ondatra zibethicus; Acomys cahirinus; Apodemus sylvaticus; Hystrix cristata; Bathyergus janetta; Georychus capensis; Eulemur coronatus; Eulemur fulvus; Vicugna pacos; Eulemur macaco; Microcebus murinus; Chinchilla lanigera; Erethizon dorsatum; Eumetopias jubatus; Caenolestes fuliginosus; Peromyscus eremicus; Peromyscus polionotus; Eulemur fulvus collaris; Lepus californicus; Tamandua tetradactyla; Talpa occidentalis; Myotis lucifugus; Rhinolophus ferrumequinum; Arvicanthis niloticus; Sorex caecutiens; Sorex isodon; Litocranius walleri; Scalopus aquaticus; Equus asinus somalicus; Ceratotherium simum simum; Callospermophilus lateralis; Mustela altaica; Microtus fortis; Napaeozapus insignis; Apodemus peninsulae; Ochotona alpina; Scapanus orarius; Hemiechinus auritus; Orientallactaga sibirica; Rhynchonycteris naso; Gerbillus nanus; Tupaia gracilis; Sylvilagus bachmani; Alticola barakshin; Asellia tridens; Nothocricetulus migratorius; Ornithorhynchus anatinus; Notamacropus eugenii; Osphranter rufus; Suncus murinus; Tadarida brasiliensis; Antrozous pallidus; Nycticebus coucang; Perodicticus potto; Macaca mulatta; Canis latrans; Mustela putorius furo; Panthera leo; Panthera tigris; Puma concolor; Delphinus delphis; Megaptera novaeangliae; Equus caballus; Orycteropus afer; Tragelaphus imberbis; Tamiasciurus hudsonicus; Cricetulus longicaudatus; Mesocricetus auratus; Meriones unguiculatus; Cricetomys gambianus; Galea musteloides; Hydrochoerus hydrochaeris; Bathyergus suillus; Lagenorhynchus albirostris; Macroscelides proboscideus; Sciurus carolinensis; Daubentonia madagascariensis; Eulemur rubriventer; Oreamnos americanus; Enhydra lutris; Hippotragus equinus; Hippotragus niger; Globicephala macrorhynchus; Apodemus agrarius; Carollia perspicillata; Peromyscus californicus; Tamias striatus; Steno bredanensis; Phodopus campbelli; Hylomys suillus; Urocitellus columbianus; Jaculus jaculus; Callithrix geoffroyi; Mustela frenata; Ctenomys lewisi; Sorex roboratus; Tamias amoenus; Tragelaphus angasii; Chrysocyon brachyurus; Nanger soemmerringii; Eudorcas thomsonii; Dipus sagitta; Tursiops aduncus; Tenrec ecaudatus; Neotoma cinerea; Microtus richardsoni; Pteropus giganteus; Pteropus pumilus; Mops pumilus; Meriones libycus; Setifer setosus; Ellobius talpinus; Cricetulus barabensis; Suncus varilla; Lasiopodomys mandarinus; Aonyx cinereus; Myodes rufocanus; Varecia rubra; Leptonycteris yerbabuenae; Eulemur rufus; Fukomys damarensis; Eulemur albifrons; Gerbillus cheesmani; Microgale drouhardi; Notamacropus rufogriseus; Nesogale talazaci; Didelphis virginiana; Didelphis marsupialis; Notamacropus agilis; Macropus fuliginosus; Choloepus hoffmanni; Amblysomus hottentotus; Artibeus jamaicensis; Varecia variegata; Cheirogaleus medius; Gorilla gorilla; Pongo pygmaeus; Homo sapiens; Crocuta crocuta; Phoca vitulina; Phocoena phocoena; Delphinapterus leucas; Physeter catodon; Diceros bicornis; Odocoileus virginianus; Muntiacus vaginalis; Bos taurus; Tragelaphus oryx; Sylvilagus floridanus; Peromyscus maniculatus; Microtus pennsylvanicus; Mus musculus; Cryptomys hottentotus; Hapalemur griseus; Nanger granti; Balaena mysticetus; Molossus molossus; Nycticeius humeralis; Elephantulus edwardii; Sylvilagus audubonii; Propithecus tattersalli; Nannospalax ehrenbergi; Sciurus niger; Sorex cinereus; Tupaia belangeri; Cavia aperea; Phascolarctos cinereus; Ochotona rufescens; Sorex palustris; Cabassous unicinctus; Myotis myotis; Aplodontia rufa; Pipistrellus pipistrellus; Saccopteryx bilineata; Addax nasomaculatus; Antidorcas marsupialis; Kobus megaceros; Chlorocebus sabaeus; Ctenomys opimus; Neomys fodiens; Sorex vagrans; Eidolon helvum; Pteropus rodricensis; Okapia johnstoni; Phyllostomus discolor; Lagenorhynchus obliquidens; Callospermophilus saturatus; Xanthonycticebus pygmaeus; Cephalorhynchus commersonii; Cuniculus paca; Myotis brandtii; Myotis nattereri; Elephantulus myurus; Rhabdomys pumilio; Pteropus vampyrus; Apodemus uralensis; Condylura cristata; Tamiasciurus douglasii; Neurotrichus gibbsii; Rhombomys opimus; Rhinolophus alcyone; Myotis evotis; Meriones rex; Hemicentetes semispinosus; Microgale cowani; Dendrohyrax arboreus; Propithecus coquereli; Hipposideros ruber; Galea musteloides leucoblephara; Alexandromys mongolicus; Nannospalax galili; Lasiopodomys gregalis; Tachyglossus aculeatus; Sarcophilus harrisii; Macropus giganteus; Tamandua mexicana; Dasypus novemcinctus; Erinaceus europaeus; Atelerix albiventris; Sorex hoyi; Pteropus poliocephalus; Pteropus hypomelanus; Rousettus aegyptiacus; Phyllostomus hastatus; Lemur catta; Otolemur crassicaudatus; Loris tardigradus; Callithrix jacchus; Papio hamadryas; Canis lupus familiaris; Ursus americanus; Martes americana; Odobenus rosmarus divergens; Elephas maximus; Loxodonta africana; Rhinoceros unicornis; Procavia capensis; Sus scrofa domesticus; Capreolus capreolus; Cervus elaphus; Aepyceros melampus; Ochotona princeps; Peromyscus leucopus; Mus minutoides; Rattus norvegicus; Rattus rattus; Cavia porcellus; Myocastor coypus; Heterocephalus glaber; Monodelphis domestica; Choloepus didactylus; Eptesicus fuscus; Chaetophractus villosus; Vombatus ursinus; Galago moholi; Acinonyx jubatus; Dromiciops gliroides; Eulemur mongoz; Suricata suricatta; Phoca groenlandica; Ictidomys tridecemlineatus; Glaucomys sabrinus; Lepus americanus; Mesoplodon bidens; Sylvilagus nuttallii; Nyctalus noctula; Castor canadensis; Trachypithecus francoisi; Cynopterus brachyotis; Lynx rufus; Plecotus auritus; Ctenomys steinbachi; Sorex minutissimus; Sorex tundrensis; Sorex trowbridgii; Nanger dama; Tragelaphus eurycerus; Tragelaphus spekii; Gazella leptoceros; Tupaia tana; Microtus ochrogaster; Propithecus diadema; Cyclopes didactylus; Eulemur flavifrons; Equus quagga; Marmota flaviventris; Parascalops breweri; Connochaetes taurinus albojubatus; Eozapus setchuanus; Phodopus roborovskii; Eulemur sanfordi; Tamias townsendii; Rhinopoma hardwickii; Ochotona dauurica; Ochotona hyperborea; Ochotona pallasi; Cavia tschudii; Myotis thysanodes; Myotis yumanensis; Neophoca cinerea; Zapus princeps; Tolypeutes matacus; Myotis vivesi; Tupaia longipes; Paraechinus aethiopicus; Microtus guentheri; Smutsia temminckii; Mirza zaza; Alticola semicanus; Lasiopodomys brandtii; Neogale vison; Crocidura cyanea; Microtus maximowiczii; Micaelamys namaquensis; Clethrionomys gapperi; Galeopterus variegatus; Sylvilagus brasiliensis; Cephalorhynchus hectori hectori; Cephalorhynchus hectori maui; Paraechinus hypomelas; Microgale thomasi; Cervus canadensis; Alexandromys oeconomus
Type:
Methylation profiling by array
Platform:
GPL28271
15043 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE223748
ID:
200223748
3.

A Nile Rat Transcriptomic Landscape Across 22 Organs By Ultra-deep Sequencing and Comparative RNA-seq pipeline (CRSP)

(Submitter supplied) We generated the first ultra-deep Nile grass rat RNA-seq data from 60 biopsy samples representing 22 major organs, providing a unique resource and spatial transcriptomic reference (e.g., tissue gene expression baseline) for using Nile grass rat as a model to study human diseases.
Organism:
Arvicanthis niloticus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL32739
59 Samples
Download data: TXT
Series
Accession:
GSE215233
ID:
200215233
4.

Next Generation Sequencing and Quantitative Analysis of Mus musculus and Arvicanthis niloticus Olfactory Epithelium Transcriptomes

(Submitter supplied) To quantify gene expression differences in olfactory epithelium between the mouse (Mus musculus) and the Nile rat (Arvicanthis niloticus), paired-end RNA sequencing (RNA-seq) was used to profile olfactory epithelium transcriptomes of six Nile rats and six mice (C57BL/6J) (one male and one female at the age of 8, 12, and 16 weeks for each species).
Organism:
Arvicanthis niloticus; Mus musculus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL24247 GPL32219
12 Samples
Download data: TXT
Series
Accession:
GSE201761
ID:
200201761
5.

RNA-Seq of eye tissue from Nile rat eye samples

(Submitter supplied) We report RNA-Seq experiments of eye tissues from Nile rat (Arivacanthis niloticus)
Organism:
Arvicanthis niloticus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22248
5 Samples
Download data: TXT
Series
Accession:
GSE84928
ID:
200084928
6.

Microarray analysis on livers of young Nile rats fed palm fruit juice

(Submitter supplied) Microarray analysis on livers of young (three weeks old) Nile rats (Arvicanthis niloticus) fed with either a high carbohydrate diet only (percentage energy from carbohydrate:fat:protein = 70:10:20, 16.7 kJ/g) or a high carbohydrate diet supplemented with palm fruit juice (PFJ) (415 ml of 13000 ppm gallic acid equivalent (GAE) for a final concentration of 5.4 g GAE per kg diet or 2.7 g per 2000 kcal) PFJ (415 ml of 13000 ppm gallic acid equivalent (GAE) for a final concentration of 5.4 g GAE per kg diet or 2.7 g per 2000 kcal) was supplemented to young Nile rats (Arvicanthis niloticus) given a high carbohydrate diet (percentage energy from carbohydrate:fat:protein = 70:10:20, 16.7 kJ/g) to observe for possible anti-diabetic effects. more...
Organism:
Mus musculus; Arvicanthis niloticus
Type:
Expression profiling by array
Platform:
GPL8389
7 Samples
Download data: TXT
Series
Accession:
GSE64901
ID:
200064901
7.

Illumina HiSeq 3000 (Arvicanthis niloticus)

Organism:
Arvicanthis niloticus
1 Series
28 Samples
Download data
Platform
Accession:
GPL32935
ID:
100032935
8.

Illumina HiSeq 2500 (Arvicanthis niloticus)

Organism:
Arvicanthis niloticus
1 Series
59 Samples
Download data
Platform
Accession:
GPL32739
ID:
100032739
9.

Illumina NovaSeq 6000 (Arvicanthis niloticus)

Organism:
Arvicanthis niloticus
1 Series
6 Samples
Download data
Platform
Accession:
GPL32219
ID:
100032219
10.

Illumina Genome Analyzer IIx (Arvicanthis niloticus)

Organism:
Arvicanthis niloticus
1 Series
5 Samples
Download data
Platform
Accession:
GPL22248
ID:
100022248
11.

Retina.Vascular_T448M

Organism:
Arvicanthis niloticus
Source name:
Whole Retinal Vasculature
Platform:
GPL32935
Series:
GSE220672
Download data
Sample
Accession:
GSM6808788
ID:
306808788
12.

Retina.Vascular_T447M

Organism:
Arvicanthis niloticus
Source name:
Whole Retinal Vasculature
Platform:
GPL32935
Series:
GSE220672
Download data
Sample
Accession:
GSM6808787
ID:
306808787
13.

Retina.Vascular_T446M

Organism:
Arvicanthis niloticus
Source name:
Whole Retinal Vasculature
Platform:
GPL32935
Series:
GSE220672
Download data
Sample
Accession:
GSM6808786
ID:
306808786
14.

Retina.Vascular_T445F

Organism:
Arvicanthis niloticus
Source name:
Whole Retinal Vasculature
Platform:
GPL32935
Series:
GSE220672
Download data
Sample
Accession:
GSM6808785
ID:
306808785
15.

Retina.Vascular_T430F

Organism:
Arvicanthis niloticus
Source name:
Whole Retinal Vasculature
Platform:
GPL32935
Series:
GSE220672
Download data
Sample
Accession:
GSM6808784
ID:
306808784
16.

Retina.Vascular_T425M

Organism:
Arvicanthis niloticus
Source name:
Whole Retinal Vasculature
Platform:
GPL32935
Series:
GSE220672
Download data
Sample
Accession:
GSM6808783
ID:
306808783
17.

Retina.Vascular_T424M

Organism:
Arvicanthis niloticus
Source name:
Whole Retinal Vasculature
Platform:
GPL32935
Series:
GSE220672
Download data
Sample
Accession:
GSM6808782
ID:
306808782
18.

Retina.Vascular_T420F

Organism:
Arvicanthis niloticus
Source name:
Whole Retinal Vasculature
Platform:
GPL32935
Series:
GSE220672
Download data
Sample
Accession:
GSM6808781
ID:
306808781
19.

Retina.Vascular_T419F

Organism:
Arvicanthis niloticus
Source name:
Whole Retinal Vasculature
Platform:
GPL32935
Series:
GSE220672
Download data
Sample
Accession:
GSM6808780
ID:
306808780
20.

Retina.Vascular_T414F

Organism:
Arvicanthis niloticus
Source name:
Whole Retinal Vasculature
Platform:
GPL32935
Series:
GSE220672
Download data
Sample
Accession:
GSM6808779
ID:
306808779
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