GEO DataSets

(Submitter supplied) Purpose: RNA-seq technology was used to profile the transcriptome of a Chinese strain of A. anophagefferens that was grown on urea, nitrate, and a mixture of urea and nitrate, and that was under N-replete, limited and recovery conditions to understand the molecular mechanisms that underlie nitrate and urea utilization. Methods: mRNA profiles of Aureococcus anophagefferens that was grown on urea, nitrate, and a mixture of urea and nitrate, and that was under N-replete, limited and recovery conditions were generated by deep sequencing using Illumina HiSeq 2000. more...

Organism:

Aureococcus anophagefferens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17121

7 Samples

Download data: TXT

(Submitter supplied) Dnmt1 epigenetically propagates symmetrical CG methylation in many eukaryotes. Their genomes are typically depleted of CG dinucleotides because of imperfect repair of deaminated methylcytosines. Here, we extensively survey diverse species lacking Dnmt1 and show that, surprisingly, symmetrical CG methylation is nonetheless frequently present and catalyzed by a different DNA methyltransferase family, Dnmt5. more...

Organism:

Cryptococcus neoformans serotype A; Leishmania major; Thalassiosira pseudonana; Cyanidioschyzon merolae; Bathycoccus prasinos; Fragilariopsis cylindrus; Phaeodactylum tricornutum; Emiliania huxleyi; Micromonas pusilla; Aureococcus anophagefferens; Ostreococcus sp. 'lucimarinus'

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

12 related Platforms

26 Samples

Download data: GFF, GTF

(Submitter supplied) Relatively little is known about the presence and regulation of pathways involved in nutrient acquisition in the brown tide forming alga, Aureococcus anophagefferens. In this study, Long-SAGE (Serial Analysis of Gene Expression) was used to profile the A. anophagefferens transcriptome under nutrient replete (control), and nitrogen (N) and phosphorus (P) deficiency with the goal of understanding how this organism responds at the transcriptional level to varying nutrient conditions. more...

Organism:

Aureococcus anophagefferens

Type:

Expression profiling by SAGE

Platform:

GPL10346

3 Samples

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(Submitter supplied) This is a virtual platform for SAGE libraries generated for Aureococcus anophagefferens using NlaIII as an anchor enzyme.

Organism:

Aureococcus anophagefferens

1 Series

3 Samples

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