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Items: 5

1.

Dnmt1-Independent CG Methylation Contributes to Nucleosome Positioning in Diverse Eukaryotes

(Submitter supplied) Dnmt1 epigenetically propagates symmetrical CG methylation in many eukaryotes. Their genomes are typically depleted of CG dinucleotides because of imperfect repair of deaminated methylcytosines. Here, we extensively survey diverse species lacking Dnmt1 and show that, surprisingly, symmetrical CG methylation is nonetheless frequently present and catalyzed by a different DNA methyltransferase family, Dnmt5. more...
Organism:
Bathycoccus prasinos; Fragilariopsis cylindrus; Leishmania major; Thalassiosira pseudonana; Cyanidioschyzon merolae; Phaeodactylum tricornutum; Emiliania huxleyi; Micromonas pusilla; Aureococcus anophagefferens; Ostreococcus sp. 'lucimarinus'; Cryptococcus neoformans serotype A
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
12 related Platforms
26 Samples
Download data: GFF, GTF
Series
Accession:
GSE46692
ID:
200046692
2.

Illumina HiSeq 2000 (Micromonas pusilla)

Organism:
Micromonas pusilla
1 Series
3 Samples
Download data
Platform
Accession:
GPL17126
ID:
100017126
3.

M. pusilla CCMP1545 RNA sequencing

Organism:
Micromonas pusilla
Source name:
Whole cells
Platform:
GPL17126
Series:
GSE46692
Download data: GTF
Sample
Accession:
GSM1134622
ID:
301134622
4.

M. pusilla CCMP1545 MNase sequencing

Organism:
Micromonas pusilla
Source name:
Whole cells
Platform:
GPL17126
Series:
GSE46692
Download data: GFF
Sample
Accession:
GSM1134621
ID:
301134621
5.

M. pusilla CCMP1545 bisulfite sequencing

Organism:
Micromonas pusilla
Source name:
Whole cells
Platform:
GPL17126
Series:
GSE46692
Download data: GFF
Sample
Accession:
GSM1134620
ID:
301134620
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Supplemental Content

db=gds|term=txid38833[Organism:noexp]|query=1|qty=12|blobid=MCID_670c8ea5475a635e85009fa5|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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