U.S. flag

An official website of the United States government

Format
Items per page
Sort by

Send to:

Choose Destination

Search results

Items: 1 to 20 of 2105

1.

A systems genomics and genetics approach to identify the genetic regulatory network for lignin content in Brassica napus seeds

(Submitter supplied) Seed quality traits of oilseed rape, Brassica napus (B. napus), exhibit quantitative inheritance determined by its genetic makeup and the environment via the mediation of a complex genetic architecture of hundreds to thousands of genes. Thus, instead of single gene analysis, network-based systems genomics and genetics approaches that combine genotype, phenotype, and molecular phenotypes offer a promising alternative to uncover this complex genetic architecture. more...
Organism:
Brassica napus
Type:
Expression profiling by array
Platform:
GPL15739
200 Samples
Download data: GPR
Series
Accession:
GSE268725
ID:
200268725
2.

aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Populus; Solanum tuberosum; Oryza sativa; Saccharum officinarum; Citrus sinensis; Zea mays; Brassica napus; Glycine max; Dianthus caryophyllus; Arabidopsis thaliana; Solanum lycopersicum
Type:
Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing
11 related Platforms
160 Samples
Download data: BROADPEAK, NARROWPEAK
Series
Accession:
GSE243806
ID:
200243806
3.

aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs [RNA-Seq]

(Submitter supplied) Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is a powerful method for profiling histone modifications and transcription factors binding throughout the genome. However, its application in economically important plant organs (EIPOs) such as seeds, fruits, tubers and flowers is challenging due to their sturdy cell walls and complex constituents. Here, we present advanced ChIP (aChIP), an optimized ChIP-seq strategy that efficiently isolates chromatin from plant tissues while simultaneously removing plant cell walls and cellular constituents. more...
Organism:
Brassica napus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29911
8 Samples
Download data: TXT, XLS
Series
Accession:
GSE243805
ID:
200243805
4.

aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs [ChIP-Seq]

(Submitter supplied) Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is a powerful method for profiling histone modifications and transcription factors binding throughout the genome. However, its application in economically important plant organs (EIPOs) such as seeds, fruits, tubers and flowers is challenging due to their sturdy cell walls and complex constituents. Here, we present advanced ChIP (aChIP), an optimized ChIP-seq strategy that efficiently isolates chromatin from plant tissues while simultaneously removing plant cell walls and cellular constituents. more...
Organism:
Citrus sinensis; Populus; Oryza sativa; Dianthus caryophyllus; Solanum lycopersicum; Zea mays; Arabidopsis thaliana; Brassica napus; Solanum tuberosum; Saccharum officinarum; Glycine max
Type:
Genome binding/occupancy profiling by high throughput sequencing
11 related Platforms
152 Samples
Download data: BROADPEAK, NARROWPEAK
Series
Accession:
GSE243804
ID:
200243804
5.

Global RNA sequencing reveals the effect of foliar boron application in protection of Brassica napus against Sclerotinia sclerotiorum infection

(Submitter supplied) Sclerotinia sclerotiorum, the causal agent of white mould, is a necrotrophic fungal pathogen responsible for extensive crop loss. Current control options rely heavily on the application of chemical fungicides that are becoming less effective and may lead to the development of fungal resistance. In the current study, we used a foliar spray application of boron to protect Brassica napus (canola) from S. more...
Organism:
Sclerotinia sclerotiorum; Brassica napus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL34395 GPL29911
18 Samples
Download data: TXT
Series
Accession:
GSE264324
ID:
200264324
6.

Harnessing Crop Biodiversity and Genomics Assisted Pre-Breeding Approaches for Next Generation Climate-Smart Varieties

(Submitter supplied) Integration of genome wide association studies (GWAS), metabolomics and transcriptomics reveals phenolic acids and flavonoids associated genes and their regulatory elements under drought stress in rapeseed flowers
Organism:
Brassica napus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL34026
12 Samples
Download data: TXT
Series
Accession:
GSE250611
ID:
200250611
7.

bnsdp1 impaired seedling growth, especially in yellowed seedlings

(Submitter supplied) impaired seedling growth, especially in yellowed seedlings, was not fully rescued in medium supplemented with exogenous sucrose.
Organism:
Brassica napus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26378
6 Samples
Download data: TXT
Series
Accession:
GSE252072
ID:
200252072
8.

Transcriptome and physiological analysis of rapeseed tolerance to post-flowering temperature increase

(Submitter supplied) This study investigates the transcriptome and physiological responses of rapeseed to post-flowering temperature increases, providing valuable insights into the molecular mechanisms underlying rapeseed tolerance to heat stress. Two rapeseed genotypes, Lumen and Solar, were assessed under control and heat stress conditions in field experiments conducted in Valdivia, Chile. Results showed that seed yield and seed number were negatively affected by heat stress, with genotype-specific responses. more...
Organism:
Brassica napus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29911
112 Samples
Download data: TXT
Series
Accession:
GSE241954
ID:
200241954
9.

Overexpression of Brassica napus COMT1 in Arabidopsis heightens UV-B-mediated resistance to Plutella xylostella herbivory

(Submitter supplied) UV-B radiation regulates numerous morphogenic, biochemical and physiological responses in plants, and can stimulate some responses typically associated with other abiotic and biotic stimuli, including invertebrate herbivory. Removal of UV-B from the growing environment of various plant species has been found to increase their susceptibility to consumption by invertebrate pests, however, to date, little research has been conducted to investigate the effects of UV-B on crop susceptibility to field pests. more...
Organism:
Brassica napus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL25850
12 Samples
Download data: TXT
Series
Accession:
GSE239314
ID:
200239314
10.

Genome-wide analysis of transcriptome and histone modifications in Brassica napus hybrids

(Submitter supplied) Although utilization of heterosis has largely improved the yield of many crops worldwide, the underlying molecular mechanism of heterosis, particularly for allopolyploids, remains unclear. Here, we compared epigenome and transcriptome data of an elite hybrid and its parental lines in three assessed tissues (seedling, flower bud, and silique) to explore their contribution to heterosis in allopolyploid B. more...
Organism:
Brassica napus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL26378
18 Samples
Download data: XLS
Series
Accession:
GSE218592
ID:
200218592
11.

Genome-wide analysis of transcriptome and histone modifications in Brassica napus hybrids [RNA-seq]

(Submitter supplied) We integrated data of transcriptome and histone modifications (H3K4me3 and H3K27me3) for HZ62 in three tissue types (seedling, flower bud and silique). Transcriptome analysis suggested that gene expression level altered in hybrids compared with parents.
Organism:
Brassica napus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26378
6 Samples
Download data: XLS
Series
Accession:
GSE218591
ID:
200218591
12.

Genome-wide analysis of transcriptome and histone modifications in Brassica napus hybrids [ChIP-seq]

(Submitter supplied) We integrated data of transcriptome and histone modifications (H3K4me3 and H3K27me3) for HZ62 in three tissue types (seedling, flower bud and silique).Histone modifications analysis suggested there was histone modifications reprogramming in the B. napus hybrids compeared with parents.
Organism:
Brassica napus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL26378
12 Samples
Download data: XLS
Series
Accession:
GSE218583
ID:
200218583
13.

Transgressive and parental dominant gene expression and cytosine methylation during seed development in Brassica napus hybrids [Bisulfite-seq]

(Submitter supplied) To investigate the expression and methylation patterns of hybrid embryo development in Brassica napus, we performed pattern analysis on different developmental stages of parental and hybrid embryos
Organism:
Brassica napus
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL29911
22 Samples
Download data: TXT
Series
Accession:
GSE202609
ID:
200202609
14.

Transgressive and parental dominant gene expression and cytosine methylation during seed development in Brassica napus hybrids [miRNA-seq]

(Submitter supplied) To investigate the expression and methylation patterns of hybrid embryo development in Brassica napus, we performed pattern analysis on different developmental stages of parental and hybrid embryos
Organism:
Brassica napus
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL29911
33 Samples
Download data: TXT
Series
Accession:
GSE202608
ID:
200202608
15.

Transgressive and parental dominant gene expression and cytosine methylation during seed development in Brassica napus hybrids [RNA-seq]

(Submitter supplied) To investigate the expression and methylation patterns of hybrid embryo development in Brassica napus, we performed pattern analysis on different developmental stages of parental and hybrid embryos
Organism:
Brassica napus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29911
33 Samples
Download data: TXT
Series
Accession:
GSE202607
ID:
200202607
16.

Transgressive and parental dominant gene expression and cytosine methylation during seed development in Brassica napus hybrids

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Brassica napus
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platform:
GPL29911
88 Samples
Download data: TXT
Series
Accession:
GSE202610
ID:
200202610
17.

Subgenome-dominant expression and alternative splicing in response to pathogen stress in polyploid Brassica napus and progenitors

(Submitter supplied) Polyploidy has played an extensive role in the evolution of flowering plants. Allopolyploids, with subgenomes containing duplicated gene pairs called homeologs, can show rapid transcriptome changes including novel alternative splicing (AS) patterns. The extent to which abiotic stress modulates AS of homeologs is a nascent topic in polyploidy research. We subjected both natural and resynthesized lines of polyploid Brassica napus, along with the progenitors B. more...
Organism:
Brassica rapa; Brassica napus; Brassica oleracea
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL28300 GPL32188 GPL29911
24 Samples
Download data: TXT
Series
Accession:
GSE201225
ID:
200201225
18.

Comparative transcriptomic analyses of Spring OilSeed Rape (SOSR)accessions in response to warm temperature.

(Submitter supplied) Elevated growth temperatures are negatively affecting crop productivity and increasing yield losses. Root traits associated with improved adaptation to rising temperatures are a promising approach to generate new varieties better suited to face the environmental constrains caused by climate change. In this study, we identified various Brassica napus roots traits altered in response to warm temperature. more...
Organism:
Brassica napus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL15579
12 Samples
Download data: CSV
Series
Accession:
GSE173272
ID:
200173272
19.

Transcriptomic and metabolomic analysis reveal that fullerol improves drought tolerance in Brassica napus L.

(Submitter supplied) The fullerenes, a kind of carbon nanoparticles, have potential for enhanced stress tolerance in plants. While the positive effects of polyhydroxy fullerene—fullerol on plants in response to drought at the physiological level have been documented, the molecular mechanism in Brassica napus are not entirely understood. In this study, exogenous fullerol was applied to the leaves of B. napus seedlings given drought. more...
Organism:
Brassica napus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL15579
9 Samples
Download data: TXT
Series
Accession:
GSE216368
ID:
200216368
20.

The molecular response of two Brassica napus cultivars to short-term hypoxia in the root zone

(Submitter supplied) Waterlogging is one major stress for crops and causes multiple problems for plants, for example low gas diffusion, reducing conditions in the soil and accumulation of toxic metabolites. Brassica napus is an important oil crop with high waterlogging sensitivity, which may cause severe yield losses. Its reactions to the stress are not fully understood. In this work the transcriptional response of rapeseed to one aspect of waterlogging, hypoxia in the root zone, was analyzed, including two rapeseed cultivars from different origin, Avatar from Europe and Zhongshuang 9 from Asia. more...
Organism:
Brassica napus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26890
36 Samples
Download data: TSV
Series
Accession:
GSE180262
ID:
200180262
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

db=gds|term=txid3708[Organism:exp]|query=1|qty=86|blobid=MCID_666c3b156e9d376f232ea84d|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
   Taxonomic Groups  [List]
Tree placeholder
    Top Organisms  [Tree]

Find related data

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center