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Items: 1 to 20 of 1164

1.

Next-generation sequencing analysis of tea plant cultivar transcriptomes in response to Colletotrichum camelliae infection

(Submitter supplied) Next-generation sequencing (NGS) was performed to identify genes changed in tea plant cultivar Zhongcha 108 upon Colletotrichum camelliae infection. The goal of the work is to find interesting genes involved in tea plant in response to fungi infection. The object is to reveal the molecular mechanism of tea plant defense.
Organism:
Camellia sinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL23285
9 Samples
Download data: XLSX
Series
Accession:
GSE226846
ID:
200226846
2.

Coloration differences in three Camellia reticulata Lindl. varieties: ‘Tongzimian’, ‘Shizitou’ and ‘Manao’

(Submitter supplied) Our results revealed that the initial flowering stage plays a critical role in the color change of MN. Metabolome analysis demonstrated that cyanidin was the primary anthocyanin in SZT and MN’s red region, while its content was low in TZM and MN’s white region. According to the transcriptome analysis, the anthocyanins biosynthesis pathway was reconstructed in Yunnan Camellia, and the low expression of CHS was detected in TZM and MN’s white region, while ANR maintained a high expression level, which may lead to the low content of cyanidin in them. more...
Organism:
Camellia reticulata
Type:
Expression profiling by high throughput sequencing
Platform:
GPL33543
27 Samples
Download data: FA, TXT
Series
Accession:
GSE236364
ID:
200236364
3.

Integrative analysis in WGBS and transcriptome profiles of an temperature sensitive etiolation tea plant cultivar ‘Zhonghuang 2’

(Submitter supplied) The green tea made from the etiolation shoots and leaves have fresh taste and strong aroma. ‘Zhonghuang 2 (ZH2) is a natural etiolation mutant and its shoots are etiolation in spring and turn green in summer. Two conditions including the relative high temperature (LT, 26 / 22oC) and the relative low temperature (LT, 18 / 14oC) were to find out the etiolated reason of ZH2. We confirmed ZH2 was a low-temperature sensitive tea plant cultivar, and the reason of shoots etiolation at LT was the reduction of stacked grana, which could cause the lack of photoreaction. more...
Organism:
Camellia sinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL32046
6 Samples
Download data: TXT
Series
Accession:
GSE234849
ID:
200234849
4.

Camellia japonica annual transcriptomics

(Submitter supplied) We report the transcreptomics analysis of seasonal expressed gene.In total, 81 cultivars are sequenced by the Illumina sequencing experiments to obtain the gene expression profiles.
Organism:
Camellia japonica; Camellia azalea
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL32871 GPL32870
81 Samples
Download data: CSV
Series
Accession:
GSE218552
ID:
200218552
5.

Xinyang Maojian green tea (Camellia sinensis) microRNAs data in different leaf development stages.

(Submitter supplied) The microRNAs reveal the molecular mechanism involved in the regulation of leaf development in Xinyang Maojian green tea.
Organism:
Camellia sinensis
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL32046
12 Samples
Download data: TXT
Series
Accession:
GSE224544
ID:
200224544
6.

Integrated metabolomic and transcriptomic analysis reveals amino acid biosynthesis may determine differences in cold resistance of tea plants

(Submitter supplied) In order to study the differential expression of cold-tolerant variety SCZ and cold-sensitive variety YH9 during cold acclimation, we analyzed transcriptome and metabolome and found that the biosynthesis of amino acids may determine the difference of cold resistance of tea plant.
Organism:
Camellia sinensis var. assamica; Camellia sinensis
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL23285 GPL32768
18 Samples
Download data: FA, XLSX
Series
Accession:
GSE216311
ID:
200216311
7.

Shading Effects on Leaf Color Conversion and Biosynthesis of Three Major Secondary Metabolites in the Albino Tea Cultivar ‘Yujinxiang’

(Submitter supplied) An increasing amount of evidence attest that the tea made by albino tea cultivars processes characteristic aroma and taste, which has been considered as a new potential product in the market. Therefore, flavor formation mechanism of albino tea cultivars have drawn exceeding attention from researchers. In this study, transcriptome, metabolomics, and whole-genome bisulfite sequencing (WGBS) were employed to investigate shading effects on leaf color conversion and biosynthesis of three major secondary metabolites in the Albino tea cultivar ‘Yujinxiang’. more...
Organism:
Camellia sinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL23285
12 Samples
Download data: TXT
Series
Accession:
GSE142753
ID:
200142753
8.

Genome-wide identification and expression profiles of CsHIPP family genes under heavy metal stress in Camellia sinensis (L.)

(Submitter supplied) HIPP (heavy metal associated isoprenylated plant protein) is a group of metal-binding metallochaperones, which plays crucial roles in metal homeostasis and detoxification. Up to now, little information of CsHIPP family genes in C. sinensis has been reported. In present study, a total of 56 CsHIPP genes from C. sinensis were identified, which were unevenly distributed on 15 chromosomes. The CsHIPP family genes were divided into five groups based on the topology of phylogenetic tree and identified AtHIPPs and OsHIPPs. more...
Organism:
Camellia sinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL25554
15 Samples
Download data: GTF, TXT
Series
Accession:
GSE212827
ID:
200212827
9.

Transcriptional response of tea roots of different genotypes to potassium

(Submitter supplied) Purpose: We investigated root foraging strategies for K of tea plants using a multi-layer split-root system by RNA-seq. Methods: One-year old tea cuttings were cultivated with the roots evenly planted on the two sides of the split root hydroponic box with a root canal. Three treatments were included to simulate the heterogeneous and homogeneous K environments. After 5d treatment, the roots on the two sides of the split root hydroponic box were collected separately and the RNA sequencing were analyzed by the Illumina Hiseq (2500, Illumina, San Diego, CA). more...
Organism:
Camellia sinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL32046
24 Samples
Download data: FA, GTF, TXT
Series
Accession:
GSE198198
ID:
200198198
10.

Investigating the Relationships between Hormones and Critical Substances in Tea Leaves During Withering

(Submitter supplied) To investigate the relationships between hormones and critical components in tea leaves during withering process, we detected the alterations of abscisic acid (ABA), salicylic acid (SA), and jasmonic acid (JA), catechins, theanine, and caffeine in tea leaves withered at different time points from 0 to 24 hours. The content of ABA increased from 0h to 9h and decreased thereafter and JA content continuous increased, however, SA content was no significantly changes during withering process. more...
Organism:
Camellia sinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL23285
12 Samples
Download data: TXT
Series
Accession:
GSE143971
ID:
200143971
11.

Affymetrix SNP array data for two parents and their 326 progenies and other 143 registered tea cultivars

(Submitter supplied) For developing the more SNPs and new high-density genetic linkage map of tea plant, two parents and their 326 progenies and 147 registered tea cultivars was sequencing by newly developed Affymetrix Axiom genotyping technology
Organism:
Camellia sinensis
Type:
SNP genotyping by SNP array
Platform:
GPL30500
475 Samples
Download data: CEL, XLSX
Series
Accession:
GSE182082
ID:
200182082
12.

Impact of exogenous caffeine on regulatory networks of microRNAs in response to Colletotrichum gloeosporioides in tea plant.

(Submitter supplied) Anthracnose, caused by Colletotrichum gloeosporioides is one of the most serious diseases of tea plant [Camellia sinensis (L.) O. Kuntze]. MicroRNAs are key modulators of gene expression in defense responses and plant immunity; although, foliar application of exogenous caffeine in anthracnose disease control management has proven to be effective, miRNA-mediated regulatory mechanisms underlying caffeine-induced plant defense response to C. more...
Organism:
Camellia sinensis
Type:
Other; Non-coding RNA profiling by high throughput sequencing
Platform:
GPL25554
32 Samples
Download data: XLSX
Series
Accession:
GSE146713
ID:
200146713
13.

Camellia oleifera seed transcriptomics

(Submitter supplied) We report the expression analysis of seed kernel in Camellia oleifera cultivars. In total 221 cultivars are sequenced by the Illumina sequencing experiments to obtain the gene expression profiles.
Organism:
Camellia oleifera
Type:
Expression profiling by high throughput sequencing
Platform:
GPL31060
221 Samples
Download data: FASTA, TXT, XLSX
Series
Accession:
GSE190644
ID:
200190644
14.

Characterizing microRNAs and their targets in differnt organs of Camellia sinensis

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Camellia sinensis
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other
Platforms:
GPL25554 GPL19224
20 Samples
Download data
Series
Accession:
GSE138151
ID:
200138151
15.

Characterizing microRNAs and their targets in differnt organs of Camellia sinensis [degradome]

(Submitter supplied) MicroRNAs (miRNAs) are a type of small non-coding RNAs, which play important roles in plant growth, development and stress responses. Tea (Camellia sinensis) prepared from tea tree is the oldest and most popular nonalcoholic beverages in the world, and has large economic, medicinal and cultural significance. Nevertheless, there are a few studies on the miRNAs and their functions in Camellia sinensis. more...
Organism:
Camellia sinensis
Type:
Other
Platform:
GPL25554
2 Samples
Download data: XLSX
Series
Accession:
GSE138150
ID:
200138150
16.

Characterizing microRNAs and their targets in differnt organs of Camellia sinensis [miRNA-seq]

(Submitter supplied) MicroRNAs (miRNAs) are a type of small non-coding RNAs, which play important roles in plant growth, development and stress responses. Tea (Camellia sinensis) prepared from tea tree is the oldest and most popular nonalcoholic beverages in the world, and has large economic, medicinal and cultural significance. Nevertheless, there are a few studies on the miRNAs and their functions in Camellia sinensis. more...
Organism:
Camellia sinensis
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL19224
9 Samples
Download data: XLSX
Series
Accession:
GSE138149
ID:
200138149
17.

Characterizing microRNAs and their targets in differnt organs of Camellia sinensis [RNA-seq]

(Submitter supplied) MicroRNAs (miRNAs) are a type of small non-coding RNAs, which play important roles in plant growth, development and stress responses. Tea (Camellia sinensis) prepared from tea tree is the oldest and most popular nonalcoholic beverages in the world, and has large economic, medicinal and cultural significance. Nevertheless, there are a few studies on the miRNAs and their functions in Camellia sinensis. more...
Organism:
Camellia sinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL19224
9 Samples
Download data: XLSX
Series
Accession:
GSE138148
ID:
200138148
18.

Comparative transcriptome analysis to reveal putative genes responsible for high theacrine content in Kucha (Camellia kucha (Chang et Wang) Chang)

(Submitter supplied) To identify the putative genes involved in theacrine biosynthesis in tea plant, we carried out comparative transcriptome analysis of Kucha (K6 and K11) and conventional varieties (YH 9 and QX 1).
Organism:
Camellia sinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL23285
12 Samples
Download data: TXT
Series
Accession:
GSE163231
ID:
200163231
19.

Identification of important genetic resources of tea oil accumulation and quality formation in Camellia oleifera based on gene expression

(Submitter supplied) To identify the important genetic resources of tea oil accumulation and quality formation in Camellia oleifera, an important woody edible oil tree native to Southern China, we have designed and customized an expression profile chip of C. oleifera with 8×60 K on the basis of transcriptome sequencing of multiple tissue samples including kernels, roots, and leaves from multiple varieties. we used the mcroarrays to determine the gene expressions in kernel development of C. more...
Organism:
Camellia oleifera
Type:
Expression profiling by array
Platform:
GPL28247
24 Samples
Download data: TXT
Series
Accession:
GSE146709
ID:
200146709
20.

Investigating Relationship between Plant Hormones and Important Substances in Harvested Tea Leaves Before Withering

(Submitter supplied) Senescence is initiated immediately in harvested tea leaves, and leads to physiological and biochemical changes, and could affects the final tea products. In the present work, we investigated the relationship between hormones and critical components in harvested tea leaves before withering, changes in hormones including abscisic acid (ABA), salicylic acid (SA), jasmonic acid (JA), and critical components like catechins, theanine, and caffeine were analyzed. more...
Organism:
Camellia sinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL23285
9 Samples
Download data: TXT
Series
Accession:
GSE143970
ID:
200143970
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