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Items: 1 to 20 of 113

1.

Improving coriander yield and quality with a beneficial bacterium

(Submitter supplied) Plant growth-promoting rhizobacteria (PGPR) are soil microbes that can promote plant growth and/or increase plant resistance to one or multiple stress conditions. These natural resources are environmentally friendly tools for reducing the use of chemical fertilizers and pesticides and for improving the nutritional quality of plants, including pharmacological metabolites. Coriander (Coriandrum sativumL.), commonly known as cilantro or Chinese parsley, is a worldwide culinary and medicinal plant with both nutritional and medicinal properties. more...
Organism:
Coriandrum sativum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL33916
6 Samples
Download data: TXT
Series
Accession:
GSE247080
ID:
200247080
2.

Arbuscular mycorrhizal fungi and carrot demonstrate contrasting responses to drought stress as revealed through a dual transcriptomic approach

(Submitter supplied) To test the impacts of drought on the host and fungus, we inoculated carrots (Daucus carota cv. ‘Napoli’) with spores of Rhizophagus irregularis DAOM 197198. Carrots grew in a greenhouse, and at the beginning of taproot development, were exposed to a 10-day water restriction. We evaluated plant growth and physiological responses, colonization level, and plant and fungal gene expression.
Organism:
Rhizophagus irregularis; Daucus carota
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL31009 GPL31010
16 Samples
Download data: TSV
Series
Accession:
GSE189806
ID:
200189806
3.

Transcriptome analysis of the transgenic and non-transgenic fleshy roots

(Submitter supplied) Effect of betanin synthesis on the metabolism of transgenic carrot. Betalain is a natural pigment with important nutritional value and broad application prospects. Previously, we produced betanin biosynthesis transgenic carrots via expressing optimized genes CYP76AD1S, cDOPA5GTS and DODA1S. Betanin can accumulate throughout the whole transgenic carrots. But the effects of betanin accumulation on the metabolism of transgenic plants and whether it produces unexpected effects are still unclear.
Organism:
Daucus carota
Type:
Expression profiling by high throughput sequencing
Platform:
GPL33364
6 Samples
Download data: TXT
Series
Accession:
GSE231349
ID:
200231349
4.

Effect of elevated CO2 concentraition in fennel (Foeniculum vulgare Mill.).

(Submitter supplied) To investigate the transcriptome changes by CO2 supply, we evaluated the transcriptional changes in fennel. We then performed gene expression profiling analysis using data obtained from RNA-seq of fennel at two stress conditions.
Organism:
Anethum foeniculum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL32865
6 Samples
Download data: FASTA, TXT
Series
Accession:
GSE218441
ID:
200218441
5.

Comparative Transcriptomics Analysis of Red (Wild) and Orange (Modified) Carrots Available in India

(Submitter supplied) We provide a comparative transcriptomics analysis between wild (red or Delhi) and modified (orange or hybrid) carrot roots available in India.
Organism:
Daucus carota subsp. sativus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL30383
2 Samples
Download data: FASTA, XLSX
Series
Accession:
GSE179859
ID:
200179859
6.

Genetic and transcription profile analysis of tissue-specific anthocyanin pigmentation in carrot root phloem

(Submitter supplied) Purple carrots can accumulate large quantities of anthocyanins in their roots. Depending on the genetic background, anthocyanin pigmentation can be expressed in the entire root, or it can display tissue specific-patterns, confined to the root phloem or xylem tissues. Within the phloem, the tissue usually contributing most of the overall anthocyanin concentration in the carrot root, purple pigmentation can be found in the outer phloem (OP) (also called cortex) and inner phloem (IP) tissues, or it can be confined exclusively to the OP. more...
Organism:
Daucus carota
Type:
Expression profiling by high throughput sequencing
Platform:
GPL30485
18 Samples
Download data: RESULTS
Series
Accession:
GSE181611
ID:
200181611
7.

Capability of FDA-EVIR Microarray for Detection of Norovirus and Hepatitis A Virus in Inoculated Tomatoes, Green Onions, and Celery

(Submitter supplied) The capability of the U.S. Food and Drug Administration Enteric Viruses tiling microarray (FDA-EVIR) was assessed for rapid molecular identification of human norovirus (NoV) and hepatitis A virus (HAV) extracted from artificially inoculated fresh produce. Two published viral extraction strategies, total RNA extraction or virus particle isolation, were employed to prepare the viral targets. We also assessed the amount of viral RNA extracted from celery by three commercially-available kits and how well that RNA performed on the FDA-EVIR. more...
Organism:
Rotavirus; Paslahepevirus balayani; Allium fistulosum; Apium graveolens; Solanum lycopersicum; Coxsackievirus; Sapovirus; Norovirus; Bacillus subtilis; unidentified adenovirus; Hepatovirus A; Astrovirus sp.
Type:
Expression profiling by genome tiling array
Platform:
GPL27751
17 Samples
Download data: CEL
Series
Accession:
GSE140351
ID:
200140351
8.

Transcriptome analysis reveals candidate genes related to anthocyanin biosynthesis in different carrot genotypes and tissues

(Submitter supplied) Taproots of different carrot genotypes were used to identify the candidate genes related to anthocyanin synthesis with particular focus on R2R3MYB, bHLH transcription factors, and glutathione S-transferase gene (GST). The RNA-sequencing analysis (RNA-Seq) showed that DcMYB6 and DcMYB7 had genotypic dependent expressed and they are likely involved in the regulation of anthocyanin biosynthesis. They were specifically upregulated in solid black taproots, including both black phloem and xylem. more...
Organism:
Daucus carota
Type:
Expression profiling by high throughput sequencing
Platform:
GPL28229
10 Samples
Download data: TXT
Series
Accession:
GSE146419
ID:
200146419
9.

Small RNA loci annotation in cacao, spinach and carrot

(Submitter supplied) Cacao, spinach and carrot are three important crops with high valuable markets. For these species there isn't already an available genome-wide annotation of small rna. Here, for the first time, we sequenced and annotated small RNAs.
Organism:
Spinacia oleracea; Theobroma cacao; Daucus carota
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL24091 GPL24089 GPL24090
5 Samples
Download data: TXT
Series
Accession:
GSE104673
ID:
200104673
10.

Identification of miRNAs from Glehnia littoralis by high-throughput sequencing and their response to salt stress

(Submitter supplied) Glehnia littoralis is a perennial herb growing on the sandy beaches. In this study, high-throughput sequencing of small RNA was performed to identify miRNAs and their response to salt stress in G. littoralis. As a result, 37 conserved miRNAs belonging to 13 families and 37 novel miRNAs were identified. Among the 74 miRNAs, the expression levels of miR-156b*, miR-171, miR-171*, and miR-319 were downregulated and that of miR-399a, miR-399a*, miR-399b, miR-399b*, novel-9 and novel-14* were upregulated under salt stress. more...
Organism:
Glehnia littoralis
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL22174
3 Samples
Download data: TXT
Series
Accession:
GSE84621
ID:
200084621
11.

Transcriptome evaluation of gene expression changes during carotenoid accumulation in the storage root of carrot (Daucus carota)

(Submitter supplied) In this study, a cross species hybridization (CSH) approach was used to evaluate whole transcriptome changes during carotenoid accumulation in the storage root of carrot (Daucus carota). Carotenoids are isoprenoid compounds providing red, yellow and orange color to plants. Previous gene expression analyses of carotenoid accumulation in non-model plant species have primarily used a candidate gene approach. more...
Organism:
Medicago sativa; Medicago truncatula; Sinorhizobium meliloti; Daucus carota
Type:
Expression profiling by array
Platform:
GPL4652
6 Samples
Download data: CEL, CHP
Series
Accession:
GSE49873
ID:
200049873
12.

Fingerprinting the Asterid species using subtracted diversity array reveals novel species-specific sequences.

(Submitter supplied) Asterids is one of the major plant clades comprising of many commercially important medicinal species. One of the major concerns in medicinal plant industry is adulteration/contamination resulting from misidentification of herbal plants. This study reports the construction and validation of a microarray capable of fingerprinting medicinally important species from the Asterids clade.
Organism:
Sambucus nigra; Camellia sinensis; Coffea arabica; Angelica archangelica; Vitex agnus-castus; Trachelospermum jasminoides; asterids; Rehmannia glutinosa; Codonopsis; Valeriana officinalis; Taraxacum officinale; Lonicera japonica; Lycium barbarum; Leonurus cardiaca; Cornus; Achillea millefolium; Impatiens; Tetrapanax papyrifer; Scrophularia nodosa; Gardenia jasminoides; Forsythia suspensa; Withania somnifera; Ilex paraguariensis; Embryophyta; Digitalis purpurea; Platycodon grandiflorus; Symphytum
Type:
Genome variation profiling by array
Platform:
GPL14119
27 Samples
Download data: TXT
Series
Accession:
GSE31242
ID:
200031242
13.

Comparison of root transcriptomes and expression of genes involved in main medicinal secondary metabolites from Bupleurum chinense and B. scorzonerifolium, the two Chinese official Radix bupleuri source species

(Submitter supplied) Radix bupleuri is a traditional Chinese crude drug and it is still widely used in contemporary medicine. Bupleurum chinense DC. and B. scorzonerifolium Willd. are officially recorded as the source species of Radix bupleuri in Pharmacopoeia of the People’s Republic of China. The obvious difference in chemical active components and pharmacological action of Radix bupleuri derived from the two species has caused attention. more...
Organism:
Bupleurum scorzonerifolium; Bupleurum chinense
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL17772 GPL17771
2 Samples
Download data
Series
Accession:
GSE51187
ID:
200051187
14.

Illumina NovaSeq 6000 (Coriandrum sativum)

Organism:
Coriandrum sativum
1 Series
6 Samples
Download data
Platform
Accession:
GPL33916
ID:
100033916
15.

DNBSEQ-T7 (Daucus carota)

Organism:
Daucus carota
1 Series
6 Samples
Download data
Platform
Accession:
GPL33364
ID:
100033364
16.

Illumina NovaSeq 6000 (Anethum foeniculum)

Organism:
Anethum foeniculum
1 Series
6 Samples
Download data
Platform
Accession:
GPL32865
ID:
100032865
17.

Illumina NovaSeq 6000 (Daucus carota; Rhizophagus irregularis)

Organism:
Daucus carota; Rhizophagus irregularis
1 Series
8 Samples
Download data
Platform
Accession:
GPL31010
ID:
100031010
18.

Illumina NovaSeq 6000 (Daucus carota)

Organism:
Daucus carota
1 Series
8 Samples
Download data
Platform
Accession:
GPL31009
ID:
100031009
19.

Illumina HiSeq 2000 (Daucus carota)

Organism:
Daucus carota
1 Series
18 Samples
Download data
Platform
Accession:
GPL30485
ID:
100030485
20.

Illumina NextSeq 500 (Daucus carota subsp. sativus)

Organism:
Daucus carota subsp. sativus
1 Series
2 Samples
Download data
Platform
Accession:
GPL30383
ID:
100030383
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