GEO DataSets

(Submitter supplied) Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goal of this study is genome wide association mapping for cold tolerance and yield studies in tomato (Solanum spp.) by phenotyping the genotypes under six diffrent temporal arrangments. Also for conducting quantitative reverse transcription polymerase chain reaction (qRT–PCR) assay of cold tolerant genes.

Organism:

Solanum lycopersicum; Solanum habrochaites; Solanum peruvianum; Solanum pimpinellifolium; Solanum chilense; Solanum lycopersicum var. cerasiforme

Type:

Genome variation profiling by high throughput sequencing

6 related Platforms

50 Samples

Download data: VCF

(Submitter supplied) Six stages of flower and fruit materials from S. lycopersicum var. Moneymaker (MM), S. lycopersicum var. cerasiforme LA1310 (CC) and Solanum pimpinellifolium PI365967 (PP) including 5DPA, 20DPA, mature green, break stage and red ripen fruits and -2DPA flower

Organism:

Solanum lycopersicum; Solanum pimpinellifolium; Solanum lycopersicum var. cerasiforme

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL19694 GPL21115 GPL20002

3 Samples

Download data: BW

(Submitter supplied) Purpose: The goals of this study was to provide genome-wide data to investigate the molecular mechanism of the interaction between ABA and ethylene during tomato fruit ripening Methods: Regarding the fruits sampled at the 9th day as a well-characterized stage, we used RNA-seq to conducted a comparative analysis of exogenous ABA and NDGA effects on all components involved in biosynthesis and signaling of ethylene and ABA.The identified crucial genes in response to ABA were further performed a ripening time-course analysis by RT-PCR. more...

Organism:

Solanum lycopersicum var. cerasiforme

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19454

6 Samples

Download data: TXT

(Submitter supplied) Purpose: The goals of this study was to provide genome-wide data to investigate the molecular mechanism of ABA regulation in many ripening related biological processes, including fruit color variation, antioxidant capacity, flavonoids biosynthesis and photosynthesis. Methods:By applying the next generation sequencing technology, we conducted a comparative analysis of exogenous ABA and NDGA effects on tomato fruit maturation. more...

Organism:

Solanum lycopersicum var. cerasiforme

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19454

3 Samples

Download data: TXT