GEO DataSets

(Submitter supplied) This study examines genomic copy-number variation among African cichlids spanning multiple tribes and radiations. We map CNVs and hotspots throughout the Oreochromis niloticus reference genome, categorize gene ontology enrichment within CNV regions, and compare results with sequence-based cichlid phylogenies.

Organism:

Oreochromis niloticus; Astatotilapia calliptera; Callochromis macrops; Variabilichromis moorii; Astatoreochromis alluaudi; Paralabidochromis sp.; Astatotilapia bloyeti; Oreochromis latilabris; Maylandia zebra; Copadichromis borleyi; Haplochromis chilotes; Pundamilia nyererei; Neochromis omnicaeruleus; Coptodon ejagham; Sarotherodon knauerae; Rubricatochromis bimaculatus; Coptodon zillii; Cyphotilapia frontosa; Lepidiolamprologus elongatus; Sarotherodon melanotheron; Oreochromis grahami; Pungu maclareni; Nyassachromis microcephalus; Tropheops sp. 'red cheek'; Haplochromis thereuterion; Coptodon deckerti; Cyathopharynx furcifer; Oreochromis alcalicus; Pseudocrenilabrus multicolor victoriae; Cyprichromis leptosoma; Labeotropheus fuelleborni; Oreochromis ndalalani; Astatotilapia flaviijosephi; Xenotilapia spiloptera; Julidochromis ornatus; Rhamphochromis longiceps; Coptodon fusiforme; Coptodon kottae; Sarotherodon lamprechti; Sarotherodon galilaeus; Tropheus moorii; Haplochromis burtoni; Ophthalmotilapia ventralis; Lobochilotes labiatus; Boulengerochromis microlepis; Neolamprologus brichardi; Eretmodus cyanostictus; Hemichromis fasciatus; Stomatepia mariae; Copadichromis virginalis; Diplotaxodon greenwoodi; Pallidochromis tokolosh; Konia eisentrauti; Benthodesmus elongatus

Type:

Genome variation profiling by genome tiling array

Platform:

GPL25405

168 Samples

Download data: PAIR, TXT