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Items: 1 to 20 of 126

1.

Integrated Whole Transcriptome Profiling and Bioinformatics Analysis for researching lychee downy blight

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Litchi chinensis
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platform:
GPL32189
24 Samples
Download data
Series
Accession:
GSE222652
ID:
200222652
2.

Integrated Whole Transcriptome Profiling and Bioinformatics Analysis for researching lychee downy blight (RNA-Seq)

(Submitter supplied) Non coding RNA (ncRNA), such as miRNA, lncRNA and circRNA, has been found to play an important role in the mechanism of plant defense against pathogens. Lychee downy blingt is the main disease of litchi fruit, inflorescence and leaf, which seriously affects the yield of lychee. In this study, we carried out a P.litchii infection experiment on lychee fruits and leaves, and the mRNA and ncRNA in the treated fruits and leaves were analyzed by whole-transcriptome RNA sequencing technology. more...
Organism:
Litchi chinensis
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platform:
GPL32189
12 Samples
Download data: CSV, FA
Series
Accession:
GSE222651
ID:
200222651
3.

Integrated Whole Transcriptome Profiling and Bioinformatics Analysis for researching lychee downy blight (miRNA-Seq)

(Submitter supplied) Non coding RNA (ncRNA), such as miRNA, lncRNA and circRNA, has been found to play an important role in the mechanism of plant defense against pathogens. Lychee downy blingt is the main disease of litchi fruit, inflorescence and leaf, which seriously affects the yield of lychee. In this study, we carried out a P.litchii infection experiment on lychee fruits and leaves, and the mRNA and ncRNA in the treated fruits and leaves were analyzed by whole-transcriptome RNA sequencing technology. more...
Organism:
Litchi chinensis
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL32189
12 Samples
Download data: CSV, FA
Series
Accession:
GSE222650
ID:
200222650
4.

Transcriptomics‐based analysis of the causes of “sugar receding” in ‘Feizixiao’ litchi (Litchi chinensis Sonn.) pulp

(Submitter supplied) Transcriptome sequencing of ‘Feizixiao' litchi pulp at 35, 63 and 69 days after anthesis
Organism:
Litchi chinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL32189
9 Samples
Download data: FA, XLSX
Series
Accession:
GSE218876
ID:
200218876
5.

Transcriptome analysis of Litchi chinensis under inoculated with P.litchii treatments

(Submitter supplied) To investigate the potential mechanism of disease resistance in Litchi, a genome-wide transcriptomic analysis was carried out using 'Guiwei' and 'Yurong1' Litchi under inoculated with P.litchii treatments.
Organism:
Litchi chinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL32189
12 Samples
Download data: CSV
Series
Accession:
GSE201243
ID:
200201243
6.

Genome-wide identification and expression analysis of MADS-box family genes in litchi (Litchi chinensis Sonn.) and their involvement in floral organogenesis

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Litchi chinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL19467
48 Samples
Download data
Series
Accession:
GSE182447
ID:
200182447
7.

Genome-wide identification and expression analysis of MADS-box family genes in litchi (Litchi chinensis Sonn.) and their involvement in floral organogenesis II

(Submitter supplied) Litchi possesses unique flower morphology and adaptive reproduction strategies. Although previous attention has been intensively devoted to the mechanisms underlying its floral induction, the molecular basis of flower organ development remains largely unknown. MADS-box genes are promise candidates for this due to their significant roles in various aspects of inflorescence and flower organogenesis. Here, we present a detailed overview of phylogeny and expression profiles of 101 MADS-box genes that were identified in litchi. more...
Organism:
Litchi chinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL19467
30 Samples
Download data: FASTA, XLS, XLSX
Series
Accession:
GSE182444
ID:
200182444
8.

Genome-wide identification and expression analysis of MADS-box family genes in litchi (Litchi chinensis Sonn.) and their involvement in floral organogenesis I

(Submitter supplied) Litchi possesses unique flower morphology and adaptive reproduction strategies. Although previous attention has been intensively devoted to the mechanisms underlying its floral induction, the molecular basis of flower organ development remains largely unknown. MADS-box genes are promise candidates for this due to their significant roles in various aspects of inflorescence and flower organogenesis. Here, we present a detailed overview of phylogeny and expression profiles of 101 MADS-box genes that were identified in litchi. more...
Organism:
Litchi chinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL19467
18 Samples
Download data: FASTA, XLS, XLSX
Series
Accession:
GSE182439
ID:
200182439
9.

Coupling of microRNA-directed phasiRNA generation with alternative splicing in small RNA-mediated gene silencing

(Submitter supplied) Purpose:We aimed to characterize genome-widely the miRNA population and phasiRNA-generating genes/loci in litchi (Litchi chinensis). Multiple high throughput sequencing strategies, including sRNA sequencing, parallel analysis of RNA ends (PARE) sequencing, and strand-specific RNA-seq, were applied in combination with thorough bioinformatics analyses using a variety of computational methods.
Organism:
Litchi chinensis
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL19467 GPL23452
12 Samples
Download data: TXT
Series
Accession:
GSE98698
ID:
200098698
10.

MicroRNAs and targets in senescent fruit of litchi during ambient storage and post cold storage shelf-life.

(Submitter supplied) Background: Litchi has high commercial value for its bright color and rich nutrients. However, it deteriorates with the pericarp turning brown within 1-2 days after harvest. The factors that mediate litchi fruit senescence are complicated. MicroRNAs act as negative regulators involving in almost every physiological process. To understand the mechanism of litchi fruit senescence and pericarp browning from miRNA level, five small RNA libraries and a degradome library from the pericarp of litchi fruit stored at ambient and post cold shelf-life were sequenced. more...
Organism:
Litchi chinensis
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL19468 GPL19467
6 Samples
Download data: XLSX
Series
Accession:
GSE63658
ID:
200063658
11.

Illumina NovaSeq 6000 (Litchi chinensis)

Organism:
Litchi chinensis
5 Series
45 Samples
Download data
Platform
Accession:
GPL32189
ID:
100032189
12.

HiSeq X Ten (Litchi chinensis)

Organism:
Litchi chinensis
Download data
Platform
Accession:
GPL31029
ID:
100031029
13.

Illumina HiSeq 4000 (Litchi chinensis)

Organism:
Litchi chinensis
1 Series
2 Samples
Download data
Platform
Accession:
GPL23452
ID:
100023452
14.

Illumina Genome Analyzer IIx (Litchi chinensis)

Organism:
Litchi chinensis
1 Series
1 Sample
Download data
Platform
Accession:
GPL19468
ID:
100019468
15.

Illumina HiSeq 2000 (Litchi chinensis)

Organism:
Litchi chinensis
5 Series
63 Samples
Download data
Platform
Accession:
GPL19467
ID:
100019467
16.

RNA-Seq FZX_Fr_M3

Organism:
Litchi chinensis
Source name:
fruits
Platform:
GPL32189
Series:
GSE222651 GSE222652
Download data
Sample
Accession:
GSM6928362
ID:
306928362
17.

RNA-Seq FZX_Fr_M2

Organism:
Litchi chinensis
Source name:
fruits
Platform:
GPL32189
Series:
GSE222651 GSE222652
Download data
Sample
Accession:
GSM6928361
ID:
306928361
18.

RNA-Seq FZX_Fr_M1

Organism:
Litchi chinensis
Source name:
fruits
Platform:
GPL32189
Series:
GSE222651 GSE222652
Download data
Sample
Accession:
GSM6928360
ID:
306928360
19.

RNA-Seq FZX_Fr_C3

Organism:
Litchi chinensis
Source name:
fruits
Platform:
GPL32189
Series:
GSE222651 GSE222652
Download data
Sample
Accession:
GSM6928359
ID:
306928359
20.

RNA-Seq FZX_Fr_C2

Organism:
Litchi chinensis
Source name:
fruits
Platform:
GPL32189
Series:
GSE222651 GSE222652
Download data
Sample
Accession:
GSM6928358
ID:
306928358
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