GEO DataSets

(Submitter supplied) Herpesviruses are frequently co-present with bacterial infection at multiple sites within the body, including the mouth, gut, and genitourinary tract. The detection of replicating virus in these compartments prompted investigation into the relationship between bacterial infection and Kaposi’s Sarcoma-associated Herpesvirus (KSHV) reactivation. Using a cell line latently infected with KSHV, we examined the ability of crude spent media containing metabolic products from periodontal and gut pathogens to reactivate KSHV. more...

Organism:

Human betaherpesvirus 6; Cucumber mosaic virus; Human gammaherpesvirus 8; Human alphaherpesvirus 1; Human alphaherpesvirus 2; Human alphaherpesvirus 3; Human betaherpesvirus 7; human papillomavirus 72; Homo sapiens; Simian-Human immunodeficiency virus

Type:

Expression profiling by array

Platform:

GPL19981

7 Samples

Download data: GPR, TXT

(Submitter supplied) Plant virus infection involves the production of viral small RNAs (vsRNAs) with the potential to associate with distinct Argonaute (AGO)-containing silencing complexes and mediate diverse silencing effects on RNA and chromatin. We used multiplexed, high-throughput pyrosequencing to profile populations of vsRNAs from plants infected with viruses from different genera. Sense and antisense vsRNAs of 20 to 24 nucleotides (nts) spread throughout the entire viral genomes in an overlapping configuration; virtually all genomic nucleotide positions were represented in the dataset. more...

Organism:

Tomato yellow leaf curl virus; Cymbidium ringspot virus; Pepper mild mottle virus; Tobacco rattle virus; Watermelon mosaic virus; Melon necrotic spot virus; Potato virus X; Turnip mosaic virus; Cucumber mosaic virus

Type:

Non-coding RNA profiling by high throughput sequencing

9 related Platforms

10 Samples

Download data: TXT

(Submitter supplied) only viral oligo sequences are available (human oligo sequences unavailable) An 18k array (a later version of the same array with additional human genes) is GPL550. Protocol: unavailable

Organism:

Homo sapiens; Human alphaherpesvirus 1; Human alphaherpesvirus 2; Human alphaherpesvirus 3; Human betaherpesvirus 6; Human betaherpesvirus 7; Cucumber mosaic virus; Human gammaherpesvirus 8; Simian-Human immunodeficiency virus; human papillomavirus 72

1 Series

7 Samples

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