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Items: 4

1.

Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Mus musculus; Homo sapiens
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
4 related Platforms
17 Samples
Download data: BAM, BED, TXT
Series
Accession:
GSE33722
ID:
200033722
2.

Base-resolution analyses of parent-of-origin and sequence dependent allele specific DNA methylation in the mouse genome (ChIP-seq and Methyl-seq)

(Submitter supplied) Allele specific DNA methylation (ASM) is crucial for genomic imprinting and mammalian development. Here we present a base-resolution, genome-wide allelic DNA methylation map for both CG and non-CG sites in the mouse brain. We found parent-of-origin dependent (imprinted) ASM at 1,952 CGs which form 55 discrete clusters. This uncovers 31 reported differentially methylated regions (DMRs), including virtually all known germline DMRs, and 24 novel candidate DMRs with some occurring at microRNA genes. more...
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platforms:
GPL9250 GPL13112
10 Samples
Download data: BAM, BED, TXT
Series
Accession:
GSE30199
ID:
200030199
3.

Illumina HiSeq 2000 (Mus musculus)

Platform
Accession:
GPL13112
ID:
100013112
4.

129_MethylC_Seq

Organism:
Mus musculus
Source name:
Frontal cortex
Platform:
GPL13112
Series:
GSE30199 GSE33722
Download data: BAM, TXT
Sample
Accession:
GSM830248
ID:
300830248
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