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Items: 4

1.

Relationship between DNMT1-RNA interactions, DNA methylation and gene expression

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Expression profiling by array; Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platforms:
GPL11154 GPL6244 GPL10999
8 Samples
Download data: BSP, CEL, GTF, WIG
Series
Accession:
GSE32260
ID:
200032260
2.

RRBS (Reduced Representation Bisulfite Sequencing) of HL60

(Submitter supplied) We exploited the methylation genome-scale screening RRBS to correlate the RNA species physically associated with DNMT1 and proximal to the annotated genes to the methylation status of the corresponding loci. Out of 15275 non ambiguous gene loci identified by DNMT1 RIP-Seq, 9436 loci were covered by RRBS. These 9436 loci were clustered according to the fold of specific DNMT1 library peaks enrichment (defined as the ratio of the sum of the area under the curve of specific DNMT1 library peaks covering the gene loci). more...
Organism:
Homo sapiens
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL10999
2 Samples
Download data: BSP
Series
Accession:
GSE32168
ID:
200032168
3.

Illumina Genome Analyzer IIx (Homo sapiens)

Platform
Accession:
GPL10999
ID:
100010999
4.

RRBS HL60 rep1

Organism:
Homo sapiens
Source name:
HL60 Cell lines
Platform:
GPL10999
Series:
GSE32168 GSE32260
Download data: BSP
Sample
Accession:
GSM797458
ID:
300797458
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Supplemental Content

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