GSM790493[Accession] - GEO DataSets

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Items: 3

Select item 2000318741.

Expression analysis of abiotic stress-treated rice

(Submitter supplied) For identification of genes up-regulated in abiotic stress (drought, high salinity, low temperature and ABA) treated rice, total RNA (100 μg) was prepared from root tissues of 14-d-old rice seedlings (Oryza sativa cv Nakdong) grown under normal growth conditions. For the high salinity and ABA treatments, the 14-d-old seedlings were transferred to a nutrient solution containing 400 mM NaCl or 100 μM ABA for 2 h in the greenhouse under continuous light of approximately 1000 μmol m-2 s -1. more...

Organism:: Oryza sativa

Type:: Expression profiling by array

Platform:: GPL7344
10 Samples

Download data: PAIR, PROBE

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Accession:: GSE31874

ID:: 200031874

Analyze with GEO2R

Select item 1000073442.

Rice NimbleGen 390K tiling array (2006-11-14_ggb_rap1_3tile_101706)

(Submitter supplied) Rice genome build information requested but not provided. Protocol: The profiling was conducted with the Rice 3'Tiling Microarray designed from 27,448 genes deposited at IRGSP, RAP1 database (http://rapdb.lab.nig.ac.jp). Among these, 20,507 genes were from representative RAP1 sequences with cDNA/EST supports and 6,941 genes were predicted without cDNA/EST supports. Ten 60-nt long probes were designed from each gene starting 60 bp ahead the end of stop codon and with shifting 10 bp so 10 probes cover 150 bp in the 3' region of the gene. more...