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Items: 3

1.

Enhanced detection of RNA modifications with high-accuracy nanopore RNA basecalling models

(Submitter supplied) Chemical RNA modifications, collectively referred to as the ‘epitranscriptome’, have been intensively studied during the last years, largely facilitated by the use of next-generation sequencing technologies. Recent efforts have turned towards the nanopore direct RNA sequencing (DRS) platform, as it allows simultaneous detection of diverse RNA modification types in full-length native RNA molecules. While RNA modifications can be identified in the form of systematic basecalling ‘errors’ in DRS datasets, m6A modifications produce very modest ‘errors’, limiting the applicability of this approach to sites that are modified at high stoichiometries. more...
Organism:
Arabidopsis thaliana; Homo sapiens; Mus musculus; synthetic construct; Saccharomyces cerevisiae; Xenopus laevis
Type:
Other
6 related Platforms
70 Samples
Download data: CSV, FA, FASTA, TSV, TXT
Series
Accession:
GSE246151
ID:
200246151
2.

MinION (synthetic construct)

Organism:
synthetic construct
16 Series
85 Samples
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Platform
Accession:
GPL25738
ID:
100025738
3.

Curlcake_m5U_rep1_sup

Organism:
synthetic construct
Source name:
synthetic construct
Platform:
GPL25738
Series:
GSE246151
Download data
Sample
Accession:
GSM7863668
ID:
307863668
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db=gds|term=GSM7863668[Accession]|query=1|qty=7|blobid=MCID_675937e5df415c74f8a8a6d4|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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