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Items: 4

1.

A draft map of cis-regulatory sequences in the mouse genome [RNA-Seq]

(Submitter supplied) As the most widely used mammalian model organism, mice play a critical role in biomedical research for mechanistic study of human development and diseases. Today, functional sequences in the mouse genome are still poorly annotated a decade after its initial sequencing. We report here a map of nearly 300,000 cis-regulatory sequences in the mouse genome, representing active promoters, enhancers and CTCF binding sites in a diverse set of 19 tissues and cell types. more...
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL13112 GPL9250
19 Samples
Download data: BAM, BIGWIG
Series
Accession:
GSE29278
ID:
200029278
2.

A draft map of cis-regulatory sequences in the mouse genome

(Submitter supplied) The laboratory mouse is the most widely used mammalian model organism in biomedical research. The 2.6 billion bases of the mouse genome share a high degree of conservation with the human genome, so a thorough annotation of the mouse genome will be of significant value to understanding the function of the human genome. To date, most of the functional sequences in the mouse genome have yet to be found, and the cis-regulatory sequences in particular are still poorly annotated. more...
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Genome variation profiling by high throughput sequencing
Platforms:
GPL11002 GPL9250 GPL13112
143 Samples
Download data: BAM, BIGWIG, BOWTIE, TXT
Series
Accession:
GSE29184
ID:
200029184
3.

Illumina HiSeq 2000 (Mus musculus)

Platform
Accession:
GPL13112
ID:
100013112
4.

RenLab-RNA-Seq-mESC

Organism:
Mus musculus
Source name:
Bruce4 embryonic stem cells
Platform:
GPL13112
Series:
GSE29184 GSE29278
Download data: BAM, BIGWIG
Sample
Accession:
GSM723776
ID:
300723776
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