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Items: 3

1.

Transcription factor interactions explain the context-dependent activity of CRX binding sites

(Submitter supplied) We assessed how the effects of transcription factor binding sites (TFBSs) on the activity of a cis-regulatory sequence (CRS) depend on the local sequence context. We constructed a library of synthetic CRSs composed of TFBSs enriched in mouse photoreceptors and assayed them by massively parallel reporter assay in live mouse retina. We used the resulting data to train neural network-based models that predict CRS activity from sequence.
Organism:
Mus musculus; synthetic construct
Type:
Other
Platforms:
GPL19057 GPL19424
4 Samples
Download data: FA, TXT
Series
Accession:
GSE225867
ID:
200225867

PubMed Full text in PMC Similar studies

2.

Illumina NextSeq 500 (Mus musculus)

Organism:
Mus musculus
10180 Series
294101 Samples
Download data
Platform
Accession:
GPL19057
ID:
100019057

3.

CDNRM RNA-seq replicate 2

Organism:
Mus musculus
Source name:
whole retina
Platform:
GPL19057
Series:
GSE225867
Download data
Sample
Accession:
GSM7058910
ID:
307058910

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db=gds|term=GSM7058910[Accession]|query=1|qty=3|blobid=MCID_6708645ec7d3ca20d534db44|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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