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Items: 4

1.

Prospective comparison of genome-wide aCGH platforms for the detection of CNVs in MR

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Genome variation profiling by SNP array; SNP genotyping by SNP array; Genome variation profiling by genome tiling array
6 related Platforms
375 Samples
Download data: CEL, CHP, PAIR, TXT
Series
Accession:
GSE27367
ID:
200027367
2.

Prospective comparison of genome-wide aCGH platforms for the detection of CNVs in MR (NimbleGen)

(Submitter supplied) Clinical laboratories are adopting array comparative genomic hybridization (AGH) as a standard clinical test. A number of whole genome AGH systems are available, but little is known about the comparative performance in a clinical context. We prospectively studied 30 children with idiopathic MR and both unaffected parents of each child using Affymetrix 500K GeneChip SNP arrays, Agilent Human Genome 244K oligonucleotide arrays and NimbleGen 385K Whole-Genome oligonucleotide arrays. more...
Organism:
Homo sapiens
Type:
Genome variation profiling by genome tiling array
Platform:
GPL7717
60 Samples
Download data: PAIR, TXT
Series
Accession:
GSE27251
ID:
200027251
3.

WiCell HG18 WG CGH 385K v2

(Submitter supplied) Single array CGH design for whole human genome (hg18; NCBI Build 36). Probes selected from hg18_tiling database using 6000 bp interval and 250 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 6253 bp (mean); 6270 bp (median). 3553 random probes added. Includes pseudo-autosomal regions from chrX and chrY, though the counts for those regions have been changed to 1 to allow standard analysis.
Organism:
Homo sapiens
4 Series
192 Samples
Download data: NDF
Platform
Accession:
GPL7717
ID:
100007717
4.

3094_Child_Father (NimbleGen)

Organism:
Homo sapiens
Source name:
peripheral blood (channel 1) peripheral blood (channel 2)
Platform:
GPL7717
Series:
GSE27251 GSE27367
Download data: PAIR, TXT
Sample
Accession:
GSM673727
ID:
300673727
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