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Items: 4

1.

Transcript identification and quantification on Mouse Imprinted Region Tiling Array (MIRTA)

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Mus musculus
Type:
Non-coding RNA profiling by genome tiling array; Expression profiling by high throughput sequencing
Platforms:
GPL11618 GPL13112
62 Samples
Download data: BEDGRAPH, PAIR, TXT, WIG
Series
Accession:
GSE75454
ID:
200075454
2.

Macro ncRNAs are abundant in imprinted regions and directly regulated by DNA methylation [tiling array]

(Submitter supplied) Imprinted macro ncRNAs such as Airn play an important role in silencing protein-coding genes in cis, macro ncRNAs could be a common feature in all imprinted gene clusters. By applying the RNA Expression on Tiling Array (RETA) technique, macro ncRNAs were found to be abundant in 26 known mouse genomic regions containing imprinted genes were detected. All well-known imprinted macro ncRNAs were up-regulated upon depletion of DNA methylation.
Organism:
Mus musculus
Type:
Non-coding RNA profiling by genome tiling array
Platform:
GPL11618
58 Samples
Download data: BEDGRAPH, PAIR, TXT, WIG
Series
Accession:
GSE26718
ID:
200026718
3.

NimbleGen custom Mouse MIRTA Array

(Submitter supplied) Annotation in this record based on NCBI mouse build 37. Array build is based on potentially imprinted genes, 100nt spacing Protocol: see manufacturer's web site www.nimblegen.com
Organism:
Mus musculus
3 Series
65 Samples
Download data: NDF, POS
Platform
Accession:
GPL11618
ID:
100011618
4.

Fetal head dpc14.5 (Total cRNA, 2nd biological replicate)

Organism:
Mus musculus
Source name:
Fetal head dpc14.5 (Total RNA) (channel 1) Input (CCE Day0, sonicated genomic DNA) (channel 2)
Platform:
GPL11618
Series:
GSE26718 GSE75454
Download data: PAIR, TXT
Sample
Accession:
GSM657911
ID:
300657911
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