GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Arabidopsis thaliana

Type:

Genome binding/occupancy profiling by genome tiling array; Expression profiling by array

Platforms:

GPL10686 GPL10689

12 Samples

Download data: CALLS, GFF, PAIR

(Submitter supplied) Investigation of genome-wide expression in the mutant of histone H3K9 methyltransferase KRYPTONITE (KYP) or DNA methyltransferase CHROMOMETHYLASE3 (CMT3) in Arabidopsis. These mutants showed decrease in H3K9 methylation and DNA methylation levels, and transcriptional activation at transposons and repeats. Using NimbleGen DNA microarray, global pattern of expression of genes and transposons were examined in these mutants.

Organism:

Arabidopsis thaliana

Type:

Expression profiling by array

Platform:

GPL10689

6 Samples

Download data: CALLS, PAIR

(Submitter supplied) Gene Expression array Format: 4x72K Source: TAIR Build: 6.0 Probe Length: 60mer Design Name: ATH6 60mer expr X4 Genes: 30,361 Probes/ Target: 2 Replicates: 1 FEAT_TYPE: transcript The Platform data table reflects a condensed, gene-level representation of the array. NimbleGen description files linked below: ATH6_60mer_expr.ndf ATH6_60mer_expr.ngd Protocol: see manufacturer's web site www.nimblegen.com

Organism:

Arabidopsis thaliana

8 Series

42 Samples

Download data: NDF, NGD