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Items: 3

1.

Self-reporting transposons enable simultaneous readout of gene expression and transcription factor binding in single cells

(Submitter supplied) In situ assays of transcription factor (TF) binding are confounded by cellular heterogeneity and represent averaged profiles in complex tissues. Single cell RNA-seq (scRNA-seq) is capable of resolving different cell types based on gene expression profiles, but no technology exists to directly link specific cell types to the binding pattern of TFs in those cell types. Here, we present self-reporting transposons (SRTs) and their use in single cell calling cards (scCC), a novel assay for simultaneously capturing gene expression profiles and mapping TF binding sites in single cells. more...
Organism:
Mus musculus; Homo sapiens
Type:
Other
8 related Platforms
27 Samples
Download data: BAM, CSV, LOOM, TSV, TXT
Series
Accession:
GSE148448
ID:
200148448
2.

Illumina NextSeq 500 (Homo sapiens)

Platform
Accession:
GPL18573
ID:
100018573
3.

K562_SP1-HyPBase_scCC

Organism:
Homo sapiens
Source name:
K562
Platform:
GPL18573
Series:
GSE148448
Download data: BAM, TSV, TXT
Sample
Accession:
GSM4471650
ID:
304471650
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db=gds|term=GSM4471650[Accession]|query=1|qty=3|blobid=MCID_667211c4ce9c6e4cac4ddc0c|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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