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Items: 4

1.

Melanoma short-term cultures and cell lines: expression profiling and CNV analyses

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Expression profiling by array; Genome variation profiling by SNP array; Expression profiling by high throughput sequencing
Platforms:
GPL9115 GPL5175 GPL6801
41 Samples
Download data: BAM, CEL
Series
Accession:
GSE17593
ID:
200017593
2.

Affymetrix SNP array data for melanoma short-term cultures and cell lines

(Submitter supplied) SNP arrays were used to derive copy number estimates and identify amplifications and deletions in melanomas These copy number breakpoints were compared to gene fusions identified by second generation sequencing of cDNA
Organism:
Homo sapiens
Type:
Genome variation profiling by SNP array
Platform:
GPL6801
18 Samples
Download data: CEL, TXT
Series
Accession:
GSE17359
ID:
200017359
3.

[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 (ucsc=hg18; ncbi=NCBI36) August 01, 2012: annotation table updated with netaffx build 32 (ucsc=hg19; ncbi=GRCh37) Protocol: see manufacturer's web site The new Affymetrix® Genome-Wide Human SNP Array 6.0 features 1.8 million genetic markers, including more than 906,600 single nucleotide polymorphisms (SNPs) and more than 946,000 probes for the detection of copy number variation. more...
Organism:
Homo sapiens
404 Series
22859 Samples
Download data
Platform
Accession:
GPL6801
ID:
100006801
4.

HapMap normal cell line NA12144

Organism:
Homo sapiens
Source name:
HapMap normal cell line NA12144
Platform:
GPL6801
Series:
GSE17359 GSE17593
Download data: CEL
Sample
Accession:
GSM433933
ID:
300433933
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