U.S. flag

An official website of the United States government

Format
Sort by

Send to:

Choose Destination

Search results

Items: 3

1.

Cross-species analysis of melanoma enhancer logic using deep learning

(Submitter supplied) Here, we combine comparative regulatory genomics with machine learning to investigate enhancer logic in melanoma. Through epigenomics profiling of 26 melanoma cell lines across six species, we examine the conservation of the two main melanoma states and underlying master regulators. By training a deep neural network on topic models derived from the human lines, we were able to classify not only human melanoma enhancers, but also regulatory regions in the other species. more...
Organism:
Danio rerio; Equus caballus; Homo sapiens; Canis lupus familiaris; Sus scrofa domesticus; Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
7 related Platforms
23 Samples
Download data: BW
Series
Accession:
GSE142238
ID:
200142238
2.

Illumina HiSeq 4000 (Homo sapiens)

Platform
Accession:
GPL20301
ID:
100020301
3.

OmniATAC-seq_MM001_TFAP2A_KD

Organism:
Homo sapiens
Source name:
Melanoma cell line
Platform:
GPL20301
Series:
GSE142238
Download data: BW
Sample
Accession:
GSM4223598
ID:
304223598
Format
Sort by

Send to:

Choose Destination

Supplemental Content

db=gds|term=GSM4223598[Accession]|query=1|qty=7|blobid=MCID_67b2504e5b08ab4a17492421|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
   Taxonomic Groups  [List]
Tree placeholder
    Top Organisms  [Tree]

Find related data

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center