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Items: 3

1.

Genome-wide analysis of differential methylation and gene expression in a testicular cancer cell line

(Submitter supplied) Aberrant methylation has been postulated to play an important role in tumorigenesis. We report the use of methylated DNA immunoprecipitation (MeDIP) and whole-genome tiling arrays to investigate methylation changes in testicular germ cell tumor (TGCT) cells. Coupled to expression profiling changes, we found that only 22-26% of differentially methylated genes were also expressed differentially. This phenomenon was independent of the presence of CpG islands in the promoter. more...
Organism:
Homo sapiens
Type:
Expression profiling by array; Methylation profiling by genome tiling array
8 related Platforms
13 Samples
Download data: BAR, BED, CEL, CHP
Series
Accession:
GSE15220
ID:
200015220
2.

[Hs35b_P05R] Affymetrix Human Tiling 2.0R Set, Array 5

(Submitter supplied) Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 2.0R Array Set is designed for chromatin immunoprecipitation (ChIP) experiments. This set of seven arrays contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 6.5 million perfect match probes to specifically interrogate genomic regions. more...
Organism:
Homo sapiens
33 Series
677 Samples
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Platform
Accession:
GPL4914
ID:
100004914
3.

TGCT_Methylation_hg17_Chip_5

Organism:
Homo sapiens
Source name:
MeDIP DNA from cultured testicular cancer cells (channel 1) MeDIP DNA from cultured normal testis cells (channel 2)
Platform:
GPL4914
Series:
GSE15220
Download data: BAR, CEL
Sample
Accession:
GSM381565
ID:
300381565
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