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Items: 4

1.

Profiling chromatin state by single-cell itChIP-seq [E7.75_E8.25_heart]

(Submitter supplied) We present a low-cost, generalizable ChIP-seq (itChIP), compatible to both low-input and single cells for profiling chromatin states. This method combines chromatin opening, simultaneous cellular indexing and chromatin tagmentation in a single tube. Single-cell itChIP data yield ~ 5000 unique reads per cell, sufficiently defining cell identifies and subpopulations of a given cell type. Our results demonstrate that itChIP is a generalizable technology for single-cell chromatin profiling of samples limited to ultra-low number of cells.
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL17021
378 Samples
Download data: BED
Series
Accession:
GSE126561
ID:
200126561
2.

Profiling chromatin state by single-cell itChIP-seq

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
4 related Platforms
3018 Samples
Download data: BED, BW
Series
Accession:
GSE109762
ID:
200109762
3.

Illumina HiSeq 2500 (Mus musculus)

Platform
Accession:
GPL17021
ID:
100017021
4.

E8.25_heart_cell149

Organism:
Mus musculus
Source name:
heart
Platform:
GPL17021
Series:
GSE109762 GSE126561
Download data: BED
Sample
Accession:
GSM3604922
ID:
303604922
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db=gds|term=GSM3604922[Accession]|query=1|qty=2|blobid=MCID_6695908ea0f80c376d9e7c3d|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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