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Items: 4

1.

Transcriptional profiling by 4SU-seq in mouse ESCs and ESC-derived neural progenitor cells.

(Submitter supplied) Nascent RNA was metabolically labelled with 4SU in undifferentiated and ESC-derived neural progenitor cells (NPCs). 4SU incorporated RNA was isolated and deep-sequenced at day 0 (ESCs), 3, 5 and 7 of differentiation. NPC differentiation was monitored through expression of a GFP reporter insereted into the Sox1 locus (46C reporter ESC line; PMID: 12524553). The aim was to monitor changes in transcription as ESCs differentiate into NPCs and relate this to enhancer activity.
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL21626
8 Samples
Download data: BIGWIG, BW
Series
Accession:
GSE115774
ID:
200115774
2.

A new model for long-range chromatin reorganization linked to enhancer activation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Mus musculus
Type:
Other; Genome binding/occupancy profiling by genome tiling array; Expression profiling by genome tiling array
Platforms:
GPL21626 GPL18635 GPL22635
32 Samples
Download data: BEDGRAPH, BIGWIG, TXT
Series
Accession:
GSE89557
ID:
200089557
3.

NextSeq 550 (Mus musculus)

Platform
Accession:
GPL21626
ID:
100021626
4.

NPC_Day3_Rep2_4SUseq

Organism:
Mus musculus
Source name:
4SU incorported RNA prepared from cells at day 3 of ES to NPC differentiation (parental mESCs - 46c Sox1-GFP reporter line)
Platform:
GPL21626
Series:
GSE89557 GSE115774
Download data: BIGWIG
Sample
Accession:
GSM3189534
ID:
303189534
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