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Items: 4

1.

Retinal Cell Type Epigenetic Memory Predicts Reprogramming Efficiency and Retinogenesis in 3D Organoid Cultures [ChIP-seq_Mm]

(Submitter supplied) Diverse cell types can be reprogrammed into pluripotent stem cells by ectopic expression of Oct4 (Pou5f1), Klf4, Sox3 and Myc. Many of these induced pluripotent stem cells (iPSCs) retain an epigenetic memory of their cellular origins and this in turn may bias their subsequent differentiation. Differentiated neurons are difficult to reprogram and there has not been a systematic side-by-side characterization of reprogramming efficiency or epigenetic memory across different neuronal subtypes. more...
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL13112
332 Samples
Download data: BW
Series
Accession:
GSE109712
ID:
200109712
2.

The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis

(Submitter supplied) Check Web Link for HMMs(11 States) for Retina hg19 and mm9 https://pecan.stjude.cloud/proteinpaint/study/retina_hic_2018
Organism:
Mus musculus; Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other
6 related Platforms
868 Samples
Download data: BED, BW, MTX, TSV, TXT
Series
Accession:
GSE87064
ID:
200087064
3.

Illumina HiSeq 2000 (Mus musculus)

Platform
Accession:
GPL13112
ID:
100013112
4.

BRD4-IPS-Rod_I_Y-8602

Organism:
Mus musculus
Source name:
Cell Line
Platform:
GPL13112
Series:
GSE87064 GSE109712
Download data: BW
Sample
Accession:
GSM2948932
ID:
302948932
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db=gds|term=GSM2948932[Accession]|query=1|qty=3|blobid=MCID_661f1eded4af9b2089540816|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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