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Items: 4

1.

Cell-of-origin specific 3D genome structure acquired during somatic cell reprogramming

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by array
Platforms:
GPL17021 GPL19057 GPL10787
85 Samples
Download data: NARROWPEAK, TXT
Series
Accession:
GSE76481
ID:
200076481
2.

Cell-of-origin specific 3D genome structure acquired during somatic cell reprogramming [Expression]

(Submitter supplied) We studied genome topology dynamics during reprogramming of different somatic cell types with highly distinct genome conformations. We find large-scale TAD repositioning and alterations of tissue-restricted genomic neighborhoods and chromatin loops, effectively erasing the somatic cell specific genome structures while establishing an embryonic stem cell-like 3D genome. Yet, early passage iPSCs carry topological hallmarks that enable discerning their cell-of-origin. more...
Organism:
Mus musculus
Type:
Expression profiling by array
Platform:
GPL10787
26 Samples
Download data: TXT
Series
Accession:
GSE76480
ID:
200076480
3.

Agilent-028005 SurePrint G3 Mouse GE 8x60K Microarray (Probe Name version)

(Submitter supplied) SurePrint G3 Mouse GE 8x60K Microarray Glass slide formatted with eight high-definition 60K arrays Includes probes for mRNAs and lincRNAs (long intergenic non-coding RNAs) 60-mer oligo probes *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL13912. Protocol: see manufacturer's web site www.chem.agilent.com
Organism:
Mus musculus
684 Series
1 Related Platform
10228 Samples
Download data
Platform
Accession:
GPL10787
ID:
100010787
4.

macrophages_iPS_p3_2 Expression

Organism:
Mus musculus
Source name:
macrophages iPS p3
Platform:
GPL10787
Series:
GSE76480 GSE76481
Download data: TXT
Sample
Accession:
GSM2026308
ID:
302026308
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Supplemental Content

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