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Items: 4

1.

Cell-of-origin specific 3D genome structure acquired during somatic cell reprogramming

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by array
Platforms:
GPL17021 GPL10787 GPL19057
85 Samples
Download data: NARROWPEAK, TXT
Series
Accession:
GSE76481
ID:
200076481
2.

Cell-of-origin specific 3D genome structure acquired during somatic cell reprogramming [HiC-Seq]

(Submitter supplied) We studied genome topology dynamics during reprogramming of different somatic cell types with highly distinct genome conformations. We find large-scale TAD repositioning and alterations of tissue-restricted genomic neighborhoods and chromatin loops, effectively erasing the somatic cell specific genome structures while establishing an embryonic stem cell-like 3D genome. Yet, early passage iPSCs carry topological hallmarks that enable discerning their cell-of-origin. more...
Organism:
Mus musculus
Type:
Other
Platform:
GPL17021
33 Samples
Download data: TXT
Series
Accession:
GSE76479
ID:
200076479
3.

Illumina HiSeq 2500 (Mus musculus)

Platform
Accession:
GPL17021
ID:
100017021
4.

MEF_1 Hi-C

Organism:
Mus musculus
Source name:
MEF 1
Platform:
GPL17021
Series:
GSE76479 GSE76481
Download data: TXT
Sample
Accession:
GSM2026269
ID:
302026269
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Supplemental Content

db=gds|term=GSM2026269[Accession]|query=1|qty=2|blobid=MCID_6624df584c13c13a0662f0a5|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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