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Items: 3

1.

A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation

(Submitter supplied) The inactive X chromosome (Xi) serves as a model to understand gene silencing on a global scale. Here, we perform identification of direct RNA interacting proteins? (iDRiP) to isolate a comprehensive protein interactome for Xist, an RNA required for Xi silencing. We discover multiple classes of interactors, including cohesins, condensins, topoisomerases, RNA helicases, chromatin remodelers and modifiers, which synergistically repress Xi transcription. more...
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other
Platforms:
GPL13112 GPL16417
42 Samples
Download data: BED, BW, TXT, XLS, XLSX
Series
Accession:
GSE67516
ID:
200067516
2.

Illumina HiSeq 2000 (Mus musculus)

Platform
Accession:
GPL13112
ID:
100013112
3.

shSMARCC2_RNAseq, replicate 2

Organism:
Mus musculus
Source name:
immortalized fibroblast
Platform:
GPL13112
Series:
GSE67516
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Sample
Accession:
GSM1696049
ID:
301696049
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db=gds|term=GSM1696049[Accession]|query=1|qty=2|blobid=MCID_6679d9c29041cd510c6a9cf3|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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