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Items: 4

1.

The landscape of accessible chromatin in mammalian pre-implantation embryos (RNA-Seq)

(Submitter supplied) In mammals, extensive chromatin reorganization is essential for reprogramming terminally committed gametes to a totipotent state during preimplantation development. However, the global chromatin landscape and its dynamics in this period remain unexplored. Here we report a genome-wide map of accessible chromatin in mouse preimplantation embryos using an improved assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) approach with CRISPR/Cas9-assisted mitochondrial DNA depletion. more...
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL18480
32 Samples
Download data: TXT
Series
Accession:
GSE66582
ID:
200066582
2.

The landscape of accessible chromatin in mammalian pre-implantation embryos

(Submitter supplied) In mammals, extensive chromatin reorganization is essential for reprogramming terminally committed gametes to a totipotent state during preimplantation development. However, the global chromatin landscape and its dynamics in this period remain unexplored. Here we report a genome-wide map of accessible chromatin in mouse preimplantation embryos using an improved assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) approach with CRISPR/Cas9-assisted mitochondrial DNA depletion. more...
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL18480
51 Samples
Download data: BEDGRAPH
Series
Accession:
GSE66390
ID:
200066390
3.

Illumina HiSeq 1500 (Mus musculus)

Platform
Accession:
GPL18480
ID:
100018480
4.

RNA-Seq 8-cell rep1

Organism:
Mus musculus
Source name:
Preimplantation embryo
Platform:
GPL18480
Series:
GSE66390 GSE66582
Download data
Sample
Accession:
GSM1625866
ID:
301625866
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Supplemental Content

db=gds|term=GSM1625866[Accession]|query=1|qty=2|blobid=MCID_666b66df909a3d46ad7be8eb|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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