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Items: 3

1.

LaSSO, a strategy for genome-wide mapping of intronic lariats and branch-points using RNA-seq

(Submitter supplied) Both canonical and alternative splicing of RNAs is governed by intronic sequence elements and produces transient lariat structures fastened by branch-points within introns. To map precisely the location of branch-points on a genomic scale, we developed LaSSO (Lariat Sequence Site Origin), a data-driven algorithm which utilizes RNA-seq data. Using fission yeast cells lacking the debranching enzyme Dbr1, LaSSO not only accurately identified canonical splicing events, but also pinpointed novel, but rare, exon-skipping events, which may reflect aberrantly spliced transcripts. more...
Organism:
Schizosaccharomyces pombe
Type:
Expression profiling by high throughput sequencing
Platform:
GPL13988
4 Samples
Download data: TXT
Series
Accession:
GSE50246
ID:
200050246
2.

Illumina HiSeq 2000 (Schizosaccharomyces pombe)

Organism:
Schizosaccharomyces pombe
114 Series
801 Samples
Download data
Platform
Accession:
GPL13988
ID:
100013988
3.

dbr1.Δ _1

Organism:
Schizosaccharomyces pombe
Source name:
S. pombe cells, dbr1.Δ
Platform:
GPL13988
Series:
GSE50246
Download data
Sample
Accession:
GSM1216866
ID:
301216866
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