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1.

Simultaneous transcriptional and epigenomic profiling from specific cell types within heterogeneous tissues in vivo

(Submitter supplied) This study introduces “NuTRAP”, a transgenic mouse that allows simultaneous isolation of cell type-specific translating mRNA and chromatin from complex tissues Using NuTRAP, we successfully characterize gene expression and epigenomic states of various adipocyte populations in vivo, To demonstrate general usefulness, we chateraterize histone states of in vivo hepatocytes.
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL19057 GPL16417 GPL17021
36 Samples
Download data: BW
Series
Accession:
GSE92590
ID:
200092590
2.

Illumina NextSeq 500 (Mus musculus)

Platform
Accession:
GPL19057
ID:
100019057
3.

Illumina HiSeq 2500 (Mus musculus)

Platform
Accession:
GPL17021
ID:
100017021
4.

Illumina MiSeq (Mus musculus)

Platform
Accession:
GPL16417
ID:
100016417
5.

Whole WAT H3K27ac rep2

Organism:
Mus musculus
Source name:
epididymal WAT
Platform:
GPL16417
Series:
GSE92590
Download data: BW
Sample
Accession:
GSM2433335
ID:
302433335
6.

Whole WAT H3K27ac rep1

Organism:
Mus musculus
Source name:
epididymal WAT
Platform:
GPL16417
Series:
GSE92590
Download data: BW
Sample
Accession:
GSM2433334
ID:
302433334
7.

Whole_WAT_Input

Organism:
Mus musculus
Source name:
epididymal WAT
Platform:
GPL17021
Series:
GSE92590
Download data: BW
Sample
Accession:
GSM2433336
ID:
302433336
8.

WAT_non-adipocyte_Input

Organism:
Mus musculus
Source name:
Pool of epididymal and inguinal WAT
Platform:
GPL17021
Series:
GSE92590
Download data: BW
Sample
Accession:
GSM2433333
ID:
302433333
9.

WAT_non-adipocyte_H3K27ac

Organism:
Mus musculus
Source name:
Pool of epididymal and inguinal WAT
Platform:
GPL17021
Series:
GSE92590
Download data: BW
Sample
Accession:
GSM2433332
ID:
302433332
10.

WAT_adipocyte_Input

Organism:
Mus musculus
Source name:
Pool of epididymal and inguinal WAT
Platform:
GPL17021
Series:
GSE92590
Download data: BW
Sample
Accession:
GSM2433331
ID:
302433331
11.

BAT_Non-adipocyte_Input

Organism:
Mus musculus
Source name:
BAT
Platform:
GPL17021
Series:
GSE92590
Download data: BW
Sample
Accession:
GSM2433321
ID:
302433321
12.

BAT_non-adipocyte_H3K27ac

Organism:
Mus musculus
Source name:
BAT
Platform:
GPL17021
Series:
GSE92590
Download data: BW
Sample
Accession:
GSM2433320
ID:
302433320
13.

BAT _adipocyte_Input

Organism:
Mus musculus
Source name:
BAT
Platform:
GPL17021
Series:
GSE92590
Download data: BW
Sample
Accession:
GSM2433319
ID:
302433319
14.

BAT_adipocyte_H3K27ac

Organism:
Mus musculus
Source name:
BAT
Platform:
GPL17021
Series:
GSE92590
Download data: BW
Sample
Accession:
GSM2433312
ID:
302433312
15.

TRAP-rep3

Organism:
Mus musculus
Source name:
epididymal WAT
Platform:
GPL17021
Series:
GSE92590
Download data
Sample
Accession:
GSM2433084
ID:
302433084
16.

TRAP-rep2

Organism:
Mus musculus
Source name:
epididymal WAT
Platform:
GPL17021
Series:
GSE92590
Download data
Sample
Accession:
GSM2433083
ID:
302433083
17.

TRAP-rep1

Organism:
Mus musculus
Source name:
epididymal WAT
Platform:
GPL17021
Series:
GSE92590
Download data
Sample
Accession:
GSM2433082
ID:
302433082
18.

Input-rep2

Organism:
Mus musculus
Source name:
epididymal WAT
Platform:
GPL17021
Series:
GSE92590
Download data
Sample
Accession:
GSM2433081
ID:
302433081
19.

Input-rep1

Organism:
Mus musculus
Source name:
epididymal WAT
Platform:
GPL17021
Series:
GSE92590
Download data
Sample
Accession:
GSM2433080
ID:
302433080
20.

WAT_adipocyte_H3K4me3

Organism:
Mus musculus
Source name:
epididymal WAT
Platform:
GPL19057
Series:
GSE92590
Download data: BW
Sample
Accession:
GSM2433330
ID:
302433330
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Supplemental Content

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