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Items: 1 to 20 of 42

1.

The non-coding variant rs1800734 enhances DCLK3 expression through long-range interaction and promotes colorectal cancer progression

(Submitter supplied) Genome-wide association studies (GWAS) have identified a great number of non-coding risk variants for colorectal cancer (CRC). To date, the majority of these variants have not been functionally studied. Identification of allele-specific transcription factor (TF) binding is of great importance to understand regulatory consequences of such variants. A recently developed proteome-wide analysis of disease-associated SNPs (PWAS) enables identification of DNA-TF interactions in an unbiased fashion. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other
Platforms:
GPL11154 GPL18573
39 Samples
Download data: BEDGRAPH, BW
2.

Illumina NextSeq 500 (Homo sapiens)

Platform
Accession:
GPL18573
ID:
100018573
3.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
4.

COLO320_AA_DCLK3

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224619
ID:
302224619
5.

COLO320_GA_DCLK3

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224618
ID:
302224618
6.

COLO320_GG_DCLK3

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224617
ID:
302224617
7.

COLO320_rs35149869_genomic

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224616
ID:
302224616
8.

SNU175_rs35149869_genomic

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224615
ID:
302224615
9.

COLO320_rs1800734_genomic

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224614
ID:
302224614
10.

SNU175_rs1800734_genomic

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224613
ID:
302224613
11.

COLO320_rs35149869_rtPCR

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224612
ID:
302224612
12.

SNU175_rs35149869_rtPCR

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224611
ID:
302224611
13.

COLO320_rs1800734_rtPCR

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224610
ID:
302224610
14.

SNU175_rs1800734_rtPCR

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224609
ID:
302224609
15.

COLO320_AA_rs1800734_4C_2

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BEDGRAPH
Sample
Accession:
GSM2224608
ID:
302224608
16.

COLO320_AA_rs1800734_4C_1

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BEDGRAPH
Sample
Accession:
GSM2224607
ID:
302224607
17.

COLO320_GA_rs1800734_4C_2

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BEDGRAPH
Sample
Accession:
GSM2224606
ID:
302224606
18.

COLO320_GA_rs1800734_4C_1

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BEDGRAPH
Sample
Accession:
GSM2224605
ID:
302224605
19.

COLO320_GG_rs1800734_4C_2

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BEDGRAPH
Sample
Accession:
GSM2224604
ID:
302224604
20.

COLO320_GG_rs1800734_4C_1

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BEDGRAPH
Sample
Accession:
GSM2224603
ID:
302224603
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