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Items: 16

1.

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

(Submitter supplied) The magnitude and determinants of differences in cis-regulation for regulatory sequences residing in episomes versus chromosomes remain almost completely unknown. To address this question in a systematic manner, we developed and applied a novel lentivirus-based massively parallel reporter assay (lentiMPRA) to directly compare the functional activities of 2,236 candidate liver enhancers in an episomal versus a chromosomally integrated context. more...
Organism:
Homo sapiens
Type:
Other
Platforms:
GPL15520 GPL18573
13 Samples
Download data: TSV
Series
Accession:
GSE83894
ID:
200083894
2.

Illumina NextSeq 500 (Homo sapiens)

Platform
Accession:
GPL18573
ID:
100018573
3.

Illumina MiSeq (Homo sapiens)

Platform
Accession:
GPL15520
ID:
100015520
4.

Cloned_array_oligo_library

Organism:
Homo sapiens
Source name:
oligo array synthesis
Platform:
GPL15520
Series:
GSE83894
Download data: TSV
Sample
Accession:
GSM2221119
ID:
302221119
5.

Wild-type_integrase_HepG2_RNA_rep3

Organism:
Homo sapiens
Source name:
hepatocellular carcinoma cell line
Platform:
GPL18573
Series:
GSE83894
Download data: TSV
Sample
Accession:
GSM2221118
ID:
302221118
6.

Wild-type_integrase_HepG2_DNA_rep3

Organism:
Homo sapiens
Source name:
hepatocellular carcinoma cell line
Platform:
GPL18573
Series:
GSE83894
Download data: TSV
Sample
Accession:
GSM2221117
ID:
302221117
7.

Wild-type_integrase_HepG2_RNA_rep2

Organism:
Homo sapiens
Source name:
hepatocellular carcinoma cell line
Platform:
GPL18573
Series:
GSE83894
Download data: TSV
Sample
Accession:
GSM2221116
ID:
302221116
8.

Wild-type_integrase_HepG2_DNA_rep2

Organism:
Homo sapiens
Source name:
hepatocellular carcinoma cell line
Platform:
GPL18573
Series:
GSE83894
Download data: TSV
Sample
Accession:
GSM2221115
ID:
302221115
9.

Wild-type_integrase_HepG2_RNA_rep1

Organism:
Homo sapiens
Source name:
hepatocellular carcinoma cell line
Platform:
GPL18573
Series:
GSE83894
Download data: TSV
Sample
Accession:
GSM2221114
ID:
302221114
10.

Wild-type_integrase_HepG2_DNA_rep1

Organism:
Homo sapiens
Source name:
hepatocellular carcinoma cell line
Platform:
GPL18573
Series:
GSE83894
Download data: TSV
Sample
Accession:
GSM2221113
ID:
302221113
11.

Mutant_integrase_HepG2_RNA_rep3

Organism:
Homo sapiens
Source name:
hepatocellular carcinoma cell line
Platform:
GPL18573
Series:
GSE83894
Download data: TSV
Sample
Accession:
GSM2221112
ID:
302221112
12.

Mutant_integrase_HepG2_DNA_rep3

Organism:
Homo sapiens
Source name:
hepatocellular carcinoma cell line
Platform:
GPL18573
Series:
GSE83894
Download data: TSV
Sample
Accession:
GSM2221111
ID:
302221111
13.

Mutant_integrase_HepG2_RNA_rep2

Organism:
Homo sapiens
Source name:
hepatocellular carcinoma cell line
Platform:
GPL18573
Series:
GSE83894
Download data: TSV
Sample
Accession:
GSM2221110
ID:
302221110
14.

Mutant_integrase_HepG2_DNA_rep2

Organism:
Homo sapiens
Source name:
hepatocellular carcinoma cell line
Platform:
GPL18573
Series:
GSE83894
Download data: TSV
Sample
Accession:
GSM2221109
ID:
302221109
15.

Mutant_integrase_HepG2_RNA_rep1

Organism:
Homo sapiens
Source name:
hepatocellular carcinoma cell line
Platform:
GPL18573
Series:
GSE83894
Download data: TSV
Sample
Accession:
GSM2221108
ID:
302221108
16.

Mutant_integrase_HepG2_DNA_rep1

Organism:
Homo sapiens
Source name:
hepatocellular carcinoma cell line
Platform:
GPL18573
Series:
GSE83894
Download data: TSV
Sample
Accession:
GSM2221107
ID:
302221107
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Supplemental Content

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