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Items: 4

1.

A Domestication-Selected Retrotransposon for Quenching Genomic Immunity in Rice [MeDIP-seq]

(Submitter supplied) Transposable elements (TEs) are genomic parasites that constitute the most abundant portions of higher plant genomes. However, whether TE selection occurred during crop domestication remains unknown. HUO is active under normal growth conditions, present at low copy numbers, inserts preferentially into regions capable of transcription, but absent in almost all modern varieties, indicating its removal during rice domestication and modern rice breeding. more...
Organism:
Oryza sativa
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL13160
2 Samples
Download data: TAR
Series
Accession:
GSE79155
ID:
200079155
2.

Illumina HiSeq 2000 (Oryza sativa)

Platform
Accession:
GPL13160
ID:
100013160
3.

two-weeks seedling plants_307T3_MeDIPseq

Organism:
Oryza sativa
Source name:
leaf_Resui retrotransposon line 307T3 (three copies)
Platform:
GPL13160
Series:
GSE78903 GSE79155
Download data: TAR
Sample
Accession:
GSM2087092
ID:
302087092
4.

two-weeks seedling plants_308D_MeDIPseq

Organism:
Oryza sativa
Source name:
leaf_wildtype
Platform:
GPL13160
Series:
GSE78903 GSE79155
Download data: TAR
Sample
Accession:
GSM2087091
ID:
302087091
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Supplemental Content

db=gds|term=GSE79155[Accession]|query=1|qty=2|blobid=MCID_67a78f1d750a117a1dd8dfd7|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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