U.S. flag

An official website of the United States government

Format
Items per page
Sort by

Send to:

Choose Destination

Search results

Items: 1 to 20 of 90

1.

ChIPmentation: fast, cheap, low-input ChIP-seq for histones and transcription factors

(Submitter supplied) Chromatin immunoprecipitation followed by next generation sequencing (ChIP-seq) is widely used to map histone marks and transcription factor binding throughout the genome. Here we present ChIPmentation, a method that combines ChIP with sequencing library preparation by Tn5 transposase (“tagmentation”). ChIPmentation introduces sequencing-compatible adapters in a single-step reaction directly on bead-bound chromatin, which reduces time, cost, and input requirements, making ChIPmentation a convenient and high-throughput alternative to existing ChIP-seq protocols.
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing; Other
Platforms:
GPL11154 GPL16791
87 Samples
Download data: BIGWIG
Series
Accession:
GSE70482
ID:
200070482
2.

Illumina HiSeq 2500 (Homo sapiens)

Platform
Accession:
GPL16791
ID:
100016791
3.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
4.

Input of ChIP-Tagmentation of PBMC cells 2pg of starting DNA - replicate 1

Organism:
Homo sapiens
Source name:
peripheral blood mononucleated cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782773
ID:
301782773
5.

Input of ChIP-Tagmentation of PBMC cells 10pg of starting DNA - replicate 1

Organism:
Homo sapiens
Source name:
peripheral blood mononucleated cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782772
ID:
301782772
6.

Input of ChIP-Tagmentation of PBMC cells 100pg of starting DNA - replicate 1

Organism:
Homo sapiens
Source name:
peripheral blood mononucleated cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782771
ID:
301782771
7.

ChIP-Tagmentation of PBMC cells with H3K4ME3 antibody with 2pg of starting DNA - replicate 1

Organism:
Homo sapiens
Source name:
peripheral blood mononucleated cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782770
ID:
301782770
8.

ChIP-Tagmentation of PBMC cells with H3K4ME3 antibody with 10pg of starting DNA - replicate 1

Organism:
Homo sapiens
Source name:
peripheral blood mononucleated cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782769
ID:
301782769
9.

ChIP-Tagmentation of PBMC cells with H3K4ME3 antibody with 100pg of starting DNA - replicate 1

Organism:
Homo sapiens
Source name:
peripheral blood mononucleated cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782768
ID:
301782768
10.

Input of ChIP-seq of nan PBMC cells with - replicate 1

Organism:
Homo sapiens
Source name:
peripheral blood mononucleated cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782767
ID:
301782767
11.

ChIP-seq of nan PBMC cells with H3K4ME3 - replicate 1

Organism:
Homo sapiens
Source name:
peripheral blood mononucleated cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782766
ID:
301782766
12.

ATAC-seq of 50 thousand K562 cells - replicate 2

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782765
ID:
301782765
13.

ATAC-seq of 50 thousand K562 cells - replicate 1

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782764
ID:
301782764
14.

ChIPmentation of 500 thousand K562 cells with PU1 antibody - replicate 3

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782763
ID:
301782763
15.

ChIPmentation of 500 thousand K562 cells with PU1 antibody - replicate 2

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782762
ID:
301782762
16.

ChIPmentation of 500 thousand K562 cells with PU1 antibody - replicate 1

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782761
ID:
301782761
17.

ChIPmentation of 500 thousand K562 cells with IGG antibody - replicate 3

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782760
ID:
301782760
18.

ChIPmentation of 500 thousand K562 cells with IGG antibody - replicate 2

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782759
ID:
301782759
19.

ChIPmentation of 500 thousand K562 cells with IGG antibody - replicate 1

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782758
ID:
301782758
20.

ChIPmentation of 500 thousand K562 cells with IGG antibody with 1 ul of Tn5 - replicate 1

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL11154
Series:
GSE70482
Download data: BIGWIG
Sample
Accession:
GSM1782757
ID:
301782757
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

db=gds|term=GSE70482[Accession]|query=1|qty=2|blobid=MCID_65dbf82fa642ff6770b42977|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
   Taxonomic Groups  [List]
Tree placeholder
    Top Organisms  [Tree]

Find related data

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center