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Items: 1 to 20 of 32

1.

Calibrating ChIP-seq with nucleosomal internal standards to measure histone modification density genome-wide

(Submitter supplied) Despite serving as a central experimental technique in epigenetics research, chromatin immunoprecipitation (ChIP) suffers from several serious drawbacks: it is a relative measurement untethered to any external scale that obviates fair comparison amongst experiments; it employs antibody reagents that have differing affinity and specificity for target epitopes, which are in turn variable in abundance; and it is frequently not reproducible. more...
Organism:
Homo sapiens; Drosophila melanogaster; synthetic construct; Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
4 related Platforms
27 Samples
Download data: BIGWIG
Series
Accession:
GSE60378
ID:
200060378
2.

Illumina HiSeq 2500 (synthetic construct)

Organism:
synthetic construct
52 Series
5343 Samples
Download data
Platform
Accession:
GPL19604
ID:
100019604
3.

Illumina HiSeq 2500 (Drosophila melanogaster)

Organism:
Drosophila melanogaster
907 Series
20099 Samples
Download data
Platform
Accession:
GPL17275
ID:
100017275
4.

Illumina HiSeq 2500 (Mus musculus)

Platform
Accession:
GPL17021
ID:
100017021
5.

Illumina HiSeq 2500 (Homo sapiens)

Platform
Accession:
GPL16791
ID:
100016791
6.

Input_ICeChIP-seq_mESC-E14

Organism:
Mus musculus
Source name:
Embryonic stem cells
Platform:
GPL17021
Series:
GSE60378
Download data
Sample
Accession:
GSM1565721
ID:
301565721
7.

H3K79me2_ICeChIP-seq_mESC-E14

Organism:
Mus musculus
Source name:
Embryonic stem cells
Platform:
GPL17021
Series:
GSE60378
Download data
Sample
Accession:
GSM1565720
ID:
301565720
8.

H3K36me3_ICeChIP-seq_mESC-E14

Organism:
Mus musculus
Source name:
Embryonic stem cells
Platform:
GPL17021
Series:
GSE60378
Download data
Sample
Accession:
GSM1565719
ID:
301565719
9.

H3K27me3_ICeChIP-seq_mESC-E14

Organism:
Mus musculus
Source name:
Embryonic stem cells
Platform:
GPL17021
Series:
GSE60378
Download data
Sample
Accession:
GSM1565718
ID:
301565718
10.

H3K9me3_ICeChIP-seq_mESC-E14

Organism:
Mus musculus
Source name:
Embryonic stem cells
Platform:
GPL17021
Series:
GSE60378
Download data
Sample
Accession:
GSM1565717
ID:
301565717
11.

H3K4me3_ICeChIP-seq_mESC-E14

Organism:
Mus musculus
Source name:
Embryonic stem cells
Platform:
GPL17021
Series:
GSE60378
Download data
Sample
Accession:
GSM1565716
ID:
301565716
12.

Input_ICeCHIP-seq_mESC-E14_S2

Organism:
Mus musculus
Source name:
Embryonic stem cells
Platform:
GPL17021
Series:
GSE60378
Download data
Sample
Accession:
GSM1482828
ID:
301482828
13.

H3K4me3_ICeCHIP-seq_mESC-E14_S2

Organism:
Mus musculus
Source name:
Embryonic stem cells
Platform:
GPL17021
Series:
GSE60378
Download data
Sample
Accession:
GSM1482827
ID:
301482827
14.

Input_ICeCHIP-seq_mESC-E14_S1

Organism:
Mus musculus
Source name:
Embryonic stem cells
Platform:
GPL17021
Series:
GSE60378
Download data
Sample
Accession:
GSM1482826
ID:
301482826
15.

H3K4me3_ICeCHIP-seq_mESC-E14_S1

Organism:
Mus musculus
Source name:
Embryonic stem cells
Platform:
GPL17021
Series:
GSE60378
Download data
Sample
Accession:
GSM1482825
ID:
301482825
16.

Semi-synthetic Nucleosomes Sequencing

Organism:
synthetic construct
Source name:
Synthetic
Platform:
GPL19604
Series:
GSE60378
Download data
Sample
Accession:
GSM1482818
ID:
301482818
17.

Barcoded DNA Sequencing

Organism:
synthetic construct
Source name:
Synthetic
Platform:
GPL19604
Series:
GSE60378
Download data
Sample
Accession:
GSM1482817
ID:
301482817
18.

Input_ICeChIP-seq_S2_P1000

Organism:
Drosophila melanogaster
Source name:
Cell culture
Platform:
GPL17275
Series:
GSE60378
Download data
Sample
Accession:
GSM1565715
ID:
301565715
19.

Input_ICeChIP-seq_S2_P500

Organism:
Drosophila melanogaster
Source name:
Cell culture
Platform:
GPL17275
Series:
GSE60378
Download data
Sample
Accession:
GSM1565714
ID:
301565714
20.

Input_ICeChIP-seq_S2_P0

Organism:
Drosophila melanogaster
Source name:
Cell culture
Platform:
GPL17275
Series:
GSE60378
Download data
Sample
Accession:
GSM1565713
ID:
301565713
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Supplemental Content

db=gds|term=GSE60378[Accession]|query=1|qty=5|blobid=MCID_65df0961d6fce424fe2a1158|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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