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Items: 12

1.

Comparative FAIRE-seq analysis reveals distinguishing features of the chromatin structure of ground state- and primed pluripotent cells

(Submitter supplied) We utilized FAIRE-seq to identify accesible chromatin in mouse embryonic-, epiblast-, and neural- stem cells in addition to mouse embryonic fibroblasts. Analysis of these data sets reveal cell type specific chromatin signatures that differentiate naïve and primed pluripotency. Functional analysis of type-specific peaks revealed cell-type specific enhancers.
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL11002
10 Samples
Download data: BED, WIG
Series
Accession:
GSE58520
ID:
200058520

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina Genome Analyzer IIx (Mus musculus)

Organism:
Mus musculus
890 Series
7694 Samples
Download data
Platform
Accession:
GPL11002
ID:
100011002

3.

MEF_FAIRE-Rep2

Organism:
Mus musculus
Source name:
FAIRE-seq of mNSC chromatin
Platform:
GPL11002
Series:
GSE58520
Download data: BED
Sample
Accession:
GSM1412936
ID:
301412936

SRA Run Selector

4.

MEF_FAIRE-Rep1

Organism:
Mus musculus
Source name:
FAIRE-seq of mNSC chromatin
Platform:
GPL11002
Series:
GSE58520
Download data: WIG
Sample
Accession:
GSM1412935
ID:
301412935

SRA Run Selector

5.

GenomicControlRep2

Organism:
Mus musculus
Source name:
FAIRE-seq of sheared purified gDNA
Platform:
GPL11002
Series:
GSE58520
Download data
Sample
Accession:
GSM1412934
ID:
301412934

SRA Run Selector

6.

GenomicControlRep1

Organism:
Mus musculus
Source name:
FAIRE-seq of sheared purified gDNA
Platform:
GPL11002
Series:
GSE58520
Download data
Sample
Accession:
GSM1412933
ID:
301412933

SRA Run Selector

7.

EpiSC_FAIRE-Rep2

Organism:
Mus musculus
Source name:
FAIRE-seq of mEpiSC chromatin
Platform:
GPL11002
Series:
GSE58520
Download data: BED
Sample
Accession:
GSM1412932
ID:
301412932

SRA Run Selector

8.

EpiSC_FAIRE-Rep1

Organism:
Mus musculus
Source name:
FAIRE-seq of mEpiSC chromatin
Platform:
GPL11002
Series:
GSE58520
Download data: WIG
Sample
Accession:
GSM1412931
ID:
301412931

SRA Run Selector

9.

NSC_FAIRE-Rep2

Organism:
Mus musculus
Source name:
FAIRE-seq of mNSC chromatin
Platform:
GPL11002
Series:
GSE58520
Download data: BED
Sample
Accession:
GSM1412930
ID:
301412930

SRA Run Selector

10.

NSC_FAIRE-Rep1

Organism:
Mus musculus
Source name:
FAIRE-seq of mNSC chromatin
Platform:
GPL11002
Series:
GSE58520
Download data: WIG
Sample
Accession:
GSM1412929
ID:
301412929

SRA Run Selector

11.

ESC_FAIRE-Rep2

Organism:
Mus musculus
Source name:
FAIRE-seq of mESC chromatin
Platform:
GPL11002
Series:
GSE58520
Download data: BED
Sample
Accession:
GSM1412928
ID:
301412928

SRA Run Selector

12.

ESC_FAIRE-Rep1

Organism:
Mus musculus
Source name:
FAIRE-seq of mESC chromatin
Platform:
GPL11002
Series:
GSE58520
Download data: WIG
Sample
Accession:
GSM1412927
ID:
301412927

SRA Run Selector

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db=gds|term=GSE58520[Accession]|query=1|qty=2|blobid=MCID_6568d96dc74a38335452950a|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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