GSE58031[Accession] - GEO DataSets - NCBI

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Endogenous germline nuclear RNAi-mediated transcriptional silencing and histone H3 lysine 9 methylation in defined regions of the Caenorhabditis elegans genome

(Submitter supplied) We describe the identification and characterization of genomic regions that are targeted by germline nuclear RNAi in C. elegans for transcriptional silencing and heterochromatic response.

Organism:: Caenorhabditis elegans

Type:: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:: GPL13657
21 Samples

Download data: FA, TXT

Series

Accession:: GSE58031

ID:: 200058031

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000136572.

Illumina HiSeq 2000 (Caenorhabditis elegans)

Organism:: Caenorhabditis elegans

447 Series
4585 Samples

Platform

Accession:: GPL13657

ID:: 100013657

Select item 3013996433.

PolII_S2_ChIP_prg1_0414

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: TXT

Sample

Accession:: GSM1399643

ID:: 301399643

SRA Run Selector

Select item 3013996424.

H3K9me3_ChIP_prg1_0414

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: TXT

Sample

Accession:: GSM1399642

ID:: 301399642

SRA Run Selector

Select item 3013996415.

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: FA

Sample

Accession:: GSM1399641

ID:: 301399641

SRA Run Selector

Select item 3013996406.

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: FA

Sample

Accession:: GSM1399640

ID:: 301399640

SRA Run Selector

Select item 3013996397.

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: FA

Sample

Accession:: GSM1399639

ID:: 301399639

SRA Run Selector

Select item 3013996388.

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: FA

Sample

Accession:: GSM1399638

ID:: 301399638

SRA Run Selector

Select item 3013996379.

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: FA

Sample

Accession:: GSM1399637

ID:: 301399637

SRA Run Selector

Select item 30139963610.

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: FA

Sample

Accession:: GSM1399636

ID:: 301399636

SRA Run Selector

Select item 30139963511.

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: FA

Sample

Accession:: GSM1399635

ID:: 301399635

SRA Run Selector

Select item 30139963412.

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: FA

Sample

Accession:: GSM1399634

ID:: 301399634

SRA Run Selector

Select item 30139963313.

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: FA

Sample

Accession:: GSM1399633

ID:: 301399633

SRA Run Selector

Select item 30139963214.

H3K9me3_ChIP_hrde1

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: TXT

Sample

Accession:: GSM1399632

ID:: 301399632

SRA Run Selector

Select item 30139963115.

H3K9me3_ChIP_WT

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: TXT

Sample

Accession:: GSM1399631

ID:: 301399631

SRA Run Selector

Select item 30139963016.

PolII_S5_ChIP_hrde1

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: TXT

Sample

Accession:: GSM1399630

ID:: 301399630

SRA Run Selector

Select item 30139962917.

PolII_S2_ChIP_hrde1

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: TXT

Sample

Accession:: GSM1399629

ID:: 301399629

SRA Run Selector

Select item 30139962818.

PolII_8wg16_ChIP_hrde1

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: TXT

Sample

Accession:: GSM1399628

ID:: 301399628

SRA Run Selector

Select item 30139962719.

ChIP_input_hrde1

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: TXT

Sample

Accession:: GSM1399627

ID:: 301399627

SRA Run Selector

Select item 30139962620.

PolII_S5_ChIP_WT

Organism:: Caenorhabditis elegans

Source name:: whole adult animals

Platform:: GPL13657
Series:: GSE58031

Download data: TXT

Sample

Accession:: GSM1399626

ID:: 301399626

SRA Run Selector

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