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Items: 1 to 20 of 60

1.

Acute depletion redefines the division of labor among DNA methyltransferases in methylating the human genome

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Methylation profiling by genome tiling array; Methylation profiling by high throughput sequencing; Expression profiling by array
Platforms:
GPL13534 GPL6244 GPL11154
56 Samples
Download data: BED, BIGWIG, CEL, TXT
Series
Accession:
GSE54843
ID:
200054843

PubMed Full text in PMC Similar studies Analyze with GEO2R

2.

[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 18, 2012: annotation table updated with netaffx build 32 July 01, 2016: annotation table updated with netaffx build 35 Protocol: See manufacturer's web site
Organism:
Homo sapiens
136 DataSets
1872 Series
27 Related Platforms
38328 Samples
Download data
Platform
Accession:
GPL6244
ID:
100006244

3.

Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)

(Submitter supplied) 1 difference between HumanMethylation450_15017482_v.1.1.bpm and HumanMethylation450_15017482_v.1.2.bpm: 1.1: 41636384,NEGATIVE,-99,Negative 604 1.2: 41636384,RESTORATION,Green,Restore Protocol: See manufacturer's website
Organism:
Homo sapiens
1647 Series
1 Related Platform
117274 Samples
Download data: BPM, CSV, TXT, XLSX
Platform
Accession:
GPL13534
ID:
100013534

4.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10129 Series
177130 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

5.

NCCIT_siRNA_3B+3L (biological replicate 3)

Organism:
Homo sapiens
Source name:
DNA from NCCIT human cells depleted of DNMT3B and DNMT3L by siRNA
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1527537
ID:
301527537

6.

NCCIT_siRNA_3B+3L (biological replicate 2)

Organism:
Homo sapiens
Source name:
DNA from NCCIT human cells depleted of DNMT3B and DNMT3L by siRNA
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1527536
ID:
301527536

7.

NCCIT_siRNA_DNMT3B (biological replicate 3)

Organism:
Homo sapiens
Source name:
DNA from NCCIT human cells depleted of DNMT3B by siRNA
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1527535
ID:
301527535

8.

NCCIT_siRNA_DNMT3B (biological replicate 2)

Organism:
Homo sapiens
Source name:
DNA from NCCIT human cells depleted of DNMT3B by siRNA
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1527534
ID:
301527534

9.

NCCIT_siRNA_DNMT1 (biological replicate 3)

Organism:
Homo sapiens
Source name:
DNA from NCCIT human cells depleted of DNMT1 by siRNA
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1527533
ID:
301527533

10.

NCCIT_siRNA_DNMT1 (biological replicate 2)

Organism:
Homo sapiens
Source name:
DNA from NCCIT human cells depleted of DNMT1 by siRNA
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1527532
ID:
301527532

11.

NCCIT_siRNA_NTC (biological replicate 2)

Organism:
Homo sapiens
Source name:
DNA from NCCIT human cells treated with a control non-targeting siRNA
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1527531
ID:
301527531

12.

NCCIT_RA_Differentiated

Organism:
Homo sapiens
Source name:
DNA from NCCIT retinoic acid induced differentiated human cells
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1325008
ID:
301325008

13.

NCCIT_Undifferentiated

Organism:
Homo sapiens
Source name:
DNA from NCCIT undifferentiated human cells
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1325007
ID:
301325007

14.

HCT116_DNMT1/DNMT3B_overexpression

Organism:
Homo sapiens
Source name:
DNA from HCT116 DNMT1/DNMT3B overexpression human colorectal carcinoma cells
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1325006
ID:
301325006

15.

HCT116_DNMT1_overexpression

Organism:
Homo sapiens
Source name:
DNA from HCT116 DNMT1 overexpression human colorectal carcinoma cells
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1325005
ID:
301325005

16.

HCT116_DNMT1/DNMT3B_KO

Organism:
Homo sapiens
Source name:
DNA from HCT116 DNMT1/DNMT3B genetic knockout human colorectal carcinoma cells
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1325004
ID:
301325004

17.

HCT116_DNMT3B_KO

Organism:
Homo sapiens
Source name:
DNA from HCT116 DNMT3B genetic knockout human colorectal carcinoma cells
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1325003
ID:
301325003

18.

HCT116_DNMT1_KO

Organism:
Homo sapiens
Source name:
DNA from HCT116 DNMT1 genetic knockout human colorectal carcinoma cells
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1325002
ID:
301325002

19.

HCT116_WT

Organism:
Homo sapiens
Source name:
DNA from HCT116 parental human colorectal carcinoma cells
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1325001
ID:
301325001

20.

NCCIT_siRNA_3A+3B+3L

Organism:
Homo sapiens
Source name:
DNA from NCCIT human cells depleted of DNTM3A, DNMT3B, and DNMT3L by siRNA
Platform:
GPL13534
Series:
GSE54840 GSE54843
Download data
Sample
Accession:
GSM1325000
ID:
301325000

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