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Items: 1 to 20 of 1019

1.

DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions

(Submitter supplied) Eukaryotic chromosomes replicate in a temporal order known as the replication-timing program. In mammals, replication timing is cell type-specific with at least half the genome switching replication timing during development, primarily in units of 400-800 kilobases ('replication domains;), whose positions are preserved in different cell types, conserved between species, and appear to confine long-range effects of chromosome rearrangements. more...
Organism:
Homo sapiens; Mus musculus
Type:
Other
25 related Platforms
993 Samples
Download data: BAM, BED, BIGWIG, BROADPEAK, NARROWPEAK, PAIR, TSV, TXT
Series
Accession:
GSE51334
ID:
200051334
2.

NimbleGen Human 3x720k Whole Genome CGH [090210_HG18_WG_CGH_v3.1_HX3]

(Submitter supplied) Build: Hg18, NCBI 36 native array description file: 090210_HG18_WG_CGH_v3.1_HX3.ndf native array description file: 090210_HG18_WG_CGH_v3.1_HX3.pos Protocol: see manufacturer's website for details
Organism:
Homo sapiens
3 Series
10 Samples
Download data: NDF, POS
Platform
Accession:
GPL15651
ID:
100015651
3.

NimbleGen Human CGH 385K Chromosome 21 Tiling Array [2006-09-22_HG18_CHR21_FT]

(Submitter supplied) Build: Hg18, NCBI 36 native array description file: 2006-09-22_HG18_CHR21_FT.ndf native array description file: 2006-09-22_HG18_CHR21_FT.pos Protocol: See www.nimblegen.com
Organism:
Homo sapiens
2 Series
4 Samples
Download data: NDF, POS
Platform
Accession:
GPL15656
ID:
100015656
4.

NimbleGen Mouse CGH 3x720K Whole-Genome Tiling Array [100718_MM9_WG_CGH]

(Submitter supplied) Build: MM9 Protocol: See www.nimblegen.com
Organism:
Mus musculus
23 Series
83 Samples
Download data: NDF, POS
Platform
Accession:
GPL15225
ID:
100015225
5.

NimbleGen Human CGH 3x720K Whole-Genome Tiling v3.0 Array [090527_HG18_WG_CGH_v3.1_HX3]

(Submitter supplied) Build: Hg18, NCBI 36 Design name : 090527_HG18_WG_CGH_v3.1_HX3 Design ID: 10033 Protocol: see manufacturer's web site www.nimblegen.com
Organism:
Homo sapiens
8 Series
141 Samples
Download data: GFF, NCD, NDF, POS
Platform
Accession:
GPL15436
ID:
100015436
6.

NimbleGen Human 3x720k Whole Genome CGH [100718_HG18_WG_CGH_v3.1_HX3]

(Submitter supplied) Build: Hg18, NCBI 36 60mer probes. Protocol: see manufacturer's web site www.nimblegen.com
Organism:
Homo sapiens
17 Series
348 Samples
Download data: NDF, POS
Platform
Accession:
GPL14965
ID:
100014965
7.

Illumina HiSeq 2000 (Mus musculus)

Platform
Accession:
GPL13112
ID:
100013112
8.

NimbleGen Mouse 385kb array [2006-07-26_MM8_WG_CGH]

(Submitter supplied) CGH design for whole mouse genome (mm8; NCBI Build 36). native array description file: 2006-07-26_MM8_WG_CGH.ndf native array description file: 2006-07-26_MM8_WG_CGH.pos Protocol: Probes selected from mm8_tiling database using 5250 bp interval and 500 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 5756 bp (mean); 5782 bp (median). more...
Organism:
Mus musculus
11 Series
119 Samples
Download data: GFF, NDF, POS
Platform
Accession:
GPL11620
ID:
100011620
9.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
10.

Illumina Genome Analyzer IIx (Homo sapiens)

Platform
Accession:
GPL10999
ID:
100010999
11.

FSU/NimbleGen Human 2.1M Whole Genome Tiling

(Submitter supplied) Build: Hg18, NCBI 36 Protocol: NimbleGen
Organism:
Homo sapiens
4 Series
46 Samples
Download data
Platform
Accession:
GPL9973
ID:
100009973
12.

Nimblegen Mouse HD2 whole genome

(Submitter supplied) NCBI 37 #native array description file = 080429_MM9_LP_Tiling_HX1.ndf Protocol: see Nimblegen website
Organism:
Mus musculus
6 Series
29 Samples
Download data: NDF
Platform
Accession:
GPL8840
ID:
100008840
13.

FSU NimbleGen Mouse 385K Whole Genome Tiling

(Submitter supplied) Build: MM8, NCBI 36 native array description file: 2006-07-26_MM8_WG_CGH.ndf native array description file: 2006-07-26_MM8_WG_CGH.pos Protocol: NimbleGen
Organism:
Mus musculus
6 Series
26 Samples
Download data: NDF, POS
Platform
Accession:
GPL9156
ID:
100009156
14.

Illumina Genome Analyzer II (Mus musculus)

Platform
Accession:
GPL9250
ID:
100009250
15.

Illumina Genome Analyzer (Mus musculus)

Platform
Accession:
GPL9185
ID:
100009185
16.

Illumina Genome Analyzer II (Homo sapiens)

Platform
Accession:
GPL9115
ID:
100009115
17.

Illumina Genome Analyzer (Homo sapiens)

Platform
Accession:
GPL9052
ID:
100009052
18.

NKI/VanSteensel_HSA_390k_5/8_v070724

(Submitter supplied) Non-repetitive part of Human chromosomes HSA7, HSA17, HSA18, HSA19. Probe spacing approximately 750bp. Based on Human genome sequence NCBI 36. Platform 5 of 8, covering the whole human genome. Includes 9731 probes common to all 8 arrays of this series, used for between array normalization. Protocol: Details on the manufacture protocol can be found on http://www.nimblegen.com/technology/index.html
Organism:
Homo sapiens
2 Series
1 Sample
Download data
Platform
Accession:
GPL5666
ID:
100005666
19.

NKI/VanSteensel_HSA_390k_2/8_v070724

(Submitter supplied) Non-repetitive part of Human chromosomes HSA2, HSA14, HSA21. Probe spacing approximately 750bp. Based on Human genome sequence NCBI 36. Platform 2 of 8, covering the whole human genome. Includes 9731 probes common to all 8 arrays of this series, used for between array normalization. Protocol: Details on the manufacture protocol can be found on http://www.nimblegen.com/technology/index.html
Organism:
Homo sapiens
2 Series
1 Sample
Download data
Platform
Accession:
GPL5646
ID:
100005646
20.

NKI/VanSteensel_HSA_390k_1/8_v070724

(Submitter supplied) Non-repetitive part of Human chromosomes HSA1, HSA13, HSA22. Probe spacing approximately 750bp. Based on Human genome sequence NCBI 36. Platform 1 of 8, covering the whole human genome. Includes 9731 probes common to all 8 arrays of this series, used for between array normalization. Protocol: Details on the manufacture protocol can be found on http://www.nimblegen.com/technology/index.html
Organism:
Homo sapiens
2 Series
1 Sample
Download data
Platform
Accession:
GPL5644
ID:
100005644
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