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Items: 1 to 20 of 204

1.

Long-range chromatin contacts reveal a role for the pluripotency and Polycomb networks in genome organization

(Submitter supplied) We mapped long-range chromatin interactions in embryonic stem cells (ESCs), iPSCs, and fibroblasts, and uncovered an ESC-specific genome organization that is gradually re-established during reprogramming. Confirming previous results, we show that open, accessible and closed chromatin character is the primary determinant of long-range chromatin interaction preferences. Importantly, we find that in ESCs, genomic regions extensively occupied by the pluripotency factors Oct4, Sox2, and Nanog preferentially co-localize. more...
Organism:
Mus musculus
Type:
Other
Platforms:
GPL11002 GPL13112
201 Samples
Download data: BEDGRAPH, XLSX
Series
Accession:
GSE50029
ID:
200050029

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2000 (Mus musculus)

Organism:
Mus musculus
8084 Series
183933 Samples
Download data
Platform
Accession:
GPL13112
ID:
100013112

3.

Illumina Genome Analyzer IIx (Mus musculus)

Organism:
Mus musculus
890 Series
7694 Samples
Download data
Platform
Accession:
GPL11002
ID:
100011002

4.

pre-iPSC Ugcg replicate 2 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212962
ID:
301212962

SRA Run Selector

5.

pre-iPSC Ugcg replicate 1 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212961
ID:
301212961

SRA Run Selector

6.

pre-iPSC Tbx5 replicate 2 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212960
ID:
301212960

SRA Run Selector

7.

pre-iPSC Tbx5 replicate 1 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212959
ID:
301212959

SRA Run Selector

8.

pre-iPSC Stk35 replicate 2 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212958
ID:
301212958

SRA Run Selector

9.

pre-iPSC Stk35 replicate 1 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212957
ID:
301212957

SRA Run Selector

10.

pre-iPSC Rhbdd1 replicate 2 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212956
ID:
301212956

SRA Run Selector

11.

pre-iPSC Rhbdd1 replicate 1 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212955
ID:
301212955

SRA Run Selector

12.

pre-iPSC Prss22 replicate 2 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212954
ID:
301212954

SRA Run Selector

13.

pre-iPSC Prss22 replicate 1 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212953
ID:
301212953

SRA Run Selector

14.

pre-iPSC Pou5f1 replicate 8 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212952
ID:
301212952

SRA Run Selector

15.

pre-iPSC Pou5f1 replicate 6 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212951
ID:
301212951

SRA Run Selector

16.

pre-iPSC Pcdhb19 replicate 4 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212948
ID:
301212948

SRA Run Selector

17.

pre-iPSC Pcdhb19 replicate 3 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212947
ID:
301212947

SRA Run Selector

18.

pre-iPSC Pcdhb19 replicate 2 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212946
ID:
301212946

SRA Run Selector

19.

pre-iPSC Pcdhb19 replicate 1 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212945
ID:
301212945

SRA Run Selector

20.

pre-iPSC Nfia replicate 3 read counts

Organism:
Mus musculus
Source name:
cell culture
Platform:
GPL13112
Series:
GSE50029
Download data: BEDGRAPH
Sample
Accession:
GSM1212944
ID:
301212944

SRA Run Selector

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