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Items: 12

1.

The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq [Ion Torrent Proton]

(Submitter supplied) Next-generation sequencing (NGS) technology applications like RNA-sequencing (RNA-seq) have dramatically expanded the potential for novel genomics discoveries, but the proliferation of various platforms and protocols for RNA-seq has created a need for reference data sets to help gauge the performance characteristics of these disparate methods. Here we describe the results of the ABRF-NGS Study on RNA-seq, which leverages replicate experiments across multiple sites using two reference RNA standards tested with four protocols (polyA selected, ribo-depleted, size selected, and degraded RNA), and examined across five NGS platforms (Illumina’s HiSeqs, Life Technologies’ Personal Genome Machine and Proton, Roche 454 GS FLX, and Pacific Biosciences RS). more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17303
10 Samples
Download data: TXT
Series
Accession:
GSE48034
ID:
200048034
2.

Ion Torrent Proton (Homo sapiens)

Platform
Accession:
GPL17303
ID:
100017303
3.

ABRF-PRO-NCI-D-1

Organism:
Homo sapiens
Source name:
ABRF-PRO-NCI-D
Platform:
GPL17303
Series:
GSE46876 GSE48034
Download data
Sample
Accession:
GSM1166068
ID:
301166068
4.

ABRF-PRO-NCI-C-1

Organism:
Homo sapiens
Source name:
ABRF-PRO-NCI-C
Platform:
GPL17303
Series:
GSE46876 GSE48034
Download data
Sample
Accession:
GSM1166067
ID:
301166067
5.

ABRF-PRO-NCI-B-1

Organism:
Homo sapiens
Source name:
ABRF-PRO-NCI-B
Platform:
GPL17303
Series:
GSE46876 GSE48034
Download data
Sample
Accession:
GSM1166066
ID:
301166066
6.

ABRF-PRO-NCI-A-1

Organism:
Homo sapiens
Source name:
ABRF-PRO-NCI-A
Platform:
GPL17303
Series:
GSE46876 GSE48034
Download data
Sample
Accession:
GSM1166065
ID:
301166065
7.

ABRF-PRO-MSK-B-3

Organism:
Homo sapiens
Source name:
ABRF-PRO-MSK-B
Platform:
GPL17303
Series:
GSE46876 GSE48034
Download data
Sample
Accession:
GSM1166064
ID:
301166064
8.

ABRF-PRO-MSK-B-2

Organism:
Homo sapiens
Source name:
ABRF-PRO-MSK-B
Platform:
GPL17303
Series:
GSE46876 GSE48034
Download data
Sample
Accession:
GSM1166063
ID:
301166063
9.

ABRF-PRO-MSK-B-1

Organism:
Homo sapiens
Source name:
ABRF-PRO-MSK-B
Platform:
GPL17303
Series:
GSE46876 GSE48034
Download data
Sample
Accession:
GSM1166062
ID:
301166062
10.

ABRF-PRO-MSK-A-3

Organism:
Homo sapiens
Source name:
ABRF-PRO-MSK-A
Platform:
GPL17303
Series:
GSE46876 GSE48034
Download data
Sample
Accession:
GSM1166061
ID:
301166061
11.

ABRF-PRO-MSK-A-2

Organism:
Homo sapiens
Source name:
ABRF-PRO-MSK-A
Platform:
GPL17303
Series:
GSE46876 GSE48034
Download data
Sample
Accession:
GSM1166060
ID:
301166060
12.

ABRF-PRO-MSK-A-1

Organism:
Homo sapiens
Source name:
ABRF-PRO-MSK-A
Platform:
GPL17303
Series:
GSE46876 GSE48034
Download data
Sample
Accession:
GSM1166059
ID:
301166059
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Supplemental Content

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