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Items: 8

1.

Mapping of Ikaros and RBPJ binding sites in the mouse T cell leukemia cell line T29

(Submitter supplied) The transcription factor Ikaros represses Notch signaling. Since Ikaros and Notch treanscriptional mediator RBPJ both recognize sequences that contain the same core TGGGAA motif, it was hypothesized that Ikaros represses Notch signaling by targeting Notch response elements and competing with RBPJ for their binding. Here we used the mouse T-cell leukemia cell line T29 to compare the genomic binding profiles of Ikaros and RBPJ by ChIP-seq.
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL11002
6 Samples
Download data: WIG
Series
Accession:
GSE46119
ID:
200046119

PubMed Similar studies SRA Run Selector

2.

Illumina Genome Analyzer IIx (Mus musculus)

Organism:
Mus musculus
890 Series
7694 Samples
Download data
Platform
Accession:
GPL11002
ID:
100011002

3.

input for Ikaros ChIP

Organism:
Mus musculus
Source name:
T29 Ik1-ER cells treated with 4OHT
Platform:
GPL11002
Series:
GSE46119
Download data: WIG
Sample
Accession:
GSM1123947
ID:
301123947

SRA Run Selector

4.

Ikaros ChIP sample

Organism:
Mus musculus
Source name:
T29 Ik1-ER cells treated with 4OHT
Platform:
GPL11002
Series:
GSE46119
Download data: WIG
Sample
Accession:
GSM1123946
ID:
301123946

SRA Run Selector

5.

RBPJ ChIP sample 2

Organism:
Mus musculus
Source name:
T29 cells
Platform:
GPL11002
Series:
GSE46119
Download data: WIG
Sample
Accession:
GSM1123945
ID:
301123945

SRA Run Selector

6.

RBPJ ChIP sample 1

Organism:
Mus musculus
Source name:
T29 cells
Platform:
GPL11002
Series:
GSE46119
Download data: WIG
Sample
Accession:
GSM1123944
ID:
301123944

SRA Run Selector

7.

input sample for RBPJ ChIP experiment 2

Organism:
Mus musculus
Source name:
T29 cells
Platform:
GPL11002
Series:
GSE46119
Download data: WIG
Sample
Accession:
GSM1123943
ID:
301123943

SRA Run Selector

8.

input sample for RBPJ ChIP experiment 1

Organism:
Mus musculus
Source name:
T29 cells
Platform:
GPL11002
Series:
GSE46119
Download data: WIG
Sample
Accession:
GSM1123942
ID:
301123942

SRA Run Selector

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db=gds|term=GSE46119[Accession]|query=1|qty=2|blobid=MCID_656d48cae1fad32e77e26506|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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