GSE45684[Accession] - GEO DataSets - NCBI

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Select item 2000456841.

RNA-seq alignment to individualized genomes

(Submitter supplied) The source of most errors in RNA sequencing (RNA-seq) read alignment is in the repetitive structure of the genome and not with the alignment algorithm. Genetic variation away from the reference sequence exacerbates this problem causing reads to be assigned to the wrong location. We developed a method, implemented as the software package Seqnature, to construct the imputed genomes of individuals (individualized genomes) of experimental model organisms including inbred mouse strains and genetically unique outbred animals. more...

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL13112
1086 Samples

Download data: TXT

Series

Accession:: GSE45684

ID:: 200045684

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000131122.

Illumina HiSeq 2000 (Mus musculus)

Organism:: Mus musculus

8067 Series
183768 Samples

Platform

Accession:: GPL13112

ID:: 100013112

Select item 3011218413.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121841

ID:: 301121841

SRA Run Selector

Select item 3011218404.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121840

ID:: 301121840

SRA Run Selector

Select item 3011218395.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121839

ID:: 301121839

SRA Run Selector

Select item 3011218386.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121838

ID:: 301121838

SRA Run Selector

Select item 3011218377.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121837

ID:: 301121837

SRA Run Selector

Select item 3011218368.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121836

ID:: 301121836

SRA Run Selector

Select item 3011218359.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121835

ID:: 301121835

SRA Run Selector

Select item 30112183410.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121834

ID:: 301121834

SRA Run Selector

Select item 30112183311.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121833

ID:: 301121833

SRA Run Selector

Select item 30112183212.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121832

ID:: 301121832

SRA Run Selector

Select item 30112183113.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121831

ID:: 301121831

SRA Run Selector

Select item 30112183014.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121830

ID:: 301121830

SRA Run Selector

Select item 30112182915.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121829

ID:: 301121829

SRA Run Selector

Select item 30112182816.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121828

ID:: 301121828

SRA Run Selector

Select item 30112182717.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121827

ID:: 301121827

SRA Run Selector

Select item 30112182618.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121826

ID:: 301121826

SRA Run Selector

Select item 30112182519.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121825

ID:: 301121825

SRA Run Selector

Select item 30112182420.

Organism:: Mus musculus

Source name:: Liver

Platform:: GPL13112
Series:: GSE45684

Sample

Accession:: GSM1121824

ID:: 301121824

SRA Run Selector

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