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Items: 1 to 20 of 33

1.

Genome-wide profiling of 5-Formylcytosine reveals it roles in epigenetic priming

(Submitter supplied) TET proteins oxidize 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC). 5fC and 5caC are excised by mammalian DNA glycosylase TDG, implicating 5mC oxidation in DNA demethylation. Here we show that the genomic locations of 5fC can be determined by coupling chemical reduction with biotin tagging. Genome-wide mapping of 5fC in mouse embryonic stem cells (mESCs) reveals that 5fC preferentially occurs at poised enhancers among other gene regulatory elements. more...
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platforms:
GPL16173 GPL13112
30 Samples
Download data: BED, TXT
Series
Accession:
GSE41545
ID:
200041545

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiScanSQ (Mus musculus)

Organism:
Mus musculus
76 Series
652 Samples
Download data
Platform
Accession:
GPL16173
ID:
100016173

3.

Illumina HiSeq 2000 (Mus musculus)

Organism:
Mus musculus
8075 Series
183806 Samples
Download data
Platform
Accession:
GPL13112
ID:
100013112

4.

Tdg -/- H3K4me1 ChIP'd, fCAB-Seq

Organism:
Mus musculus
Source name:
Tdg -/- H3K4me1 ChIP'd, fCAB-Seq
Platform:
GPL13112
Series:
GSE41545
Download data
Sample
Accession:
GSM1104081
ID:
301104081

SRA Run Selector

5.

Tdg -/- H3K4me1 ChIP'd, Methyl-Seq

Organism:
Mus musculus
Source name:
Tdg -/- H3K4me1 ChIP'd, Methyl-Seq
Platform:
GPL13112
Series:
GSE41545
Download data
Sample
Accession:
GSM1104080
ID:
301104080

SRA Run Selector

6.

Tdg fl/fl H3K4me1 ChIP'd, fCAB-Seq

Organism:
Mus musculus
Source name:
Tdg fl/fl H3K4me1 ChIP'd, fCAB-Seq
Platform:
GPL13112
Series:
GSE41545
Download data
Sample
Accession:
GSM1104079
ID:
301104079

SRA Run Selector

7.

Tdg fl/fl H3K4me1 ChIP'd, Methyl-Seq

Organism:
Mus musculus
Source name:
Tdg fl/fl H3K4me1 ChIP'd, Methyl-Seq
Platform:
GPL13112
Series:
GSE41545
Download data
Sample
Accession:
GSM1104078
ID:
301104078

SRA Run Selector

8.

5fC enriched DNA from Tdg fl/fl mouse EB cells, replicate 2

Organism:
Mus musculus
Source name:
5fC enriched DNA from Tdg fl/fl mouse EB cells
Platform:
GPL16173
Series:
GSE41545
Download data
Sample
Accession:
GSM1104077
ID:
301104077

SRA Run Selector

9.

5fC enriched DNA from Tdg fl/fl mouse EB cells, replicate 1

Organism:
Mus musculus
Source name:
5fC enriched DNA from Tdg fl/fl mouse EB cells
Platform:
GPL16173
Series:
GSE41545
Download data
Sample
Accession:
GSM1104076
ID:
301104076

SRA Run Selector

10.

5hmC enriched DNA from Tdg fl/fl mouse EB cells, replicate 2

Organism:
Mus musculus
Source name:
5hmC enriched DNA from Tdg fl/fl mouse EB cells
Platform:
GPL16173
Series:
GSE41545
Download data
Sample
Accession:
GSM1104075
ID:
301104075

SRA Run Selector

11.

5hmC enriched DNA from Tdg fl/fl mouse EB cells, replicate 1

Organism:
Mus musculus
Source name:
5hmC enriched DNA from Tdg fl/fl mouse EB cells
Platform:
GPL16173
Series:
GSE41545
Download data
Sample
Accession:
GSM1104074
ID:
301104074

SRA Run Selector

12.

Tdg -/- polyA RNA-Seq replicate 2

Organism:
Mus musculus
Source name:
Tdg -/- polyA RNA-Seq
Platform:
GPL16173
Series:
GSE41545
Download data
Sample
Accession:
GSM1019089
ID:
301019089

SRA Run Selector

13.

Tdg -/- polyA RNA-Seq replicate 1

Organism:
Mus musculus
Source name:
Tdg -/- polyA RNA-Seq
Platform:
GPL16173
Series:
GSE41545
Download data
Sample
Accession:
GSM1019088
ID:
301019088

SRA Run Selector

14.

Tdg fl/fl polyA RNA-Seq replicate 2

Organism:
Mus musculus
Source name:
Tdg fl/fl polyA RNA-Seq
Platform:
GPL16173
Series:
GSE41545
Download data
Sample
Accession:
GSM1019087
ID:
301019087

SRA Run Selector

15.

Tdg fl/fl polyA RNA-Seq replicate 1

Organism:
Mus musculus
Source name:
Tdg fl/fl polyA RNA-Seq
Platform:
GPL16173
Series:
GSE41545
Download data
Sample
Accession:
GSM1019086
ID:
301019086

SRA Run Selector

16.

Non-NaBH4 Control enrichment from Tdg fl/fl mouse ES cells b

Organism:
Mus musculus
Source name:
Non-NaBH4 Control enrichment from Tdg fl/fl mouse ES cells b
Platform:
GPL16173
Series:
GSE41545
Download data
Sample
Accession:
GSM1019085
ID:
301019085

SRA Run Selector

17.

Non-NaBH4 Control enrichment from Tdg fl/fl mouse ES cells a

Organism:
Mus musculus
Source name:
Non-NaBH4 Control enrichment from Tdg fl/fl mouse ES cells a
Platform:
GPL16173
Series:
GSE41545
Download data
Sample
Accession:
GSM1019084
ID:
301019084

SRA Run Selector

18.

Non-enriched input genomic DNA from Tdg -/- mouse ES cells

Organism:
Mus musculus
Source name:
Non-enriched input genomic DNA from Tdg -/- mouse ES cells
Platform:
GPL16173
Series:
GSE41545
Download data
Sample
Accession:
GSM1019083
ID:
301019083

SRA Run Selector

19.

p300 ChIP-Seq from Tdg -/- mouse ES cells, replicate c

Organism:
Mus musculus
Source name:
p300 ChIP-Seq from Tdg -/- mouse ES cells, replicate c
Platform:
GPL16173
Series:
GSE41545
Download data
Sample
Accession:
GSM1019082
ID:
301019082

SRA Run Selector

20.

p300 ChIP-Seq from Tdg -/- mouse ES cells, replicate b

Organism:
Mus musculus
Source name:
p300 ChIP-Seq from Tdg -/- mouse ES cells, replicate b
Platform:
GPL16173
Series:
GSE41545
Download data
Sample
Accession:
GSM1019081
ID:
301019081

SRA Run Selector

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