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Items: 20

1.

Localization of the Rb tumor suppressor in MEFs during reprogramming to iPS and the consequence of Rb loss on the transcriptional profile and histone landscape in these cells

(Submitter supplied) The reprogramming of differentiated cells to an embryonic stem cell-like state provides a powerful system to explore fundamental mechanisms of development, including how mammalian cells establish and maintain pluripotency and long-term self-renewal capability. Based on the similarities between embryonic stem cells and cancer cells, we investigated the potential role of the retinoblastoma tumor suppressor and cell cycle regulator RB in the reprogramming of fibroblasts into induced pluripotent stem cells (iPS cells). more...
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL13112
18 Samples
Download data: BED, FPKM_TRACKING, WIG
Series
Accession:
GSE40594
ID:
200040594

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2000 (Mus musculus)

Organism:
Mus musculus
8078 Series
183811 Samples
Download data
Platform
Accession:
GPL13112
ID:
100013112

3.

Cre-infected cKO MEFs H3K27me3 ChIPseq biological replicate 3

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data: BED
Sample
Accession:
GSM997590
ID:
300997590

SRA Run Selector

4.

Cre-infected cKO MEFs H3K9me3 ChIPseq biological replicate 3

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data: BED
Sample
Accession:
GSM997589
ID:
300997589

SRA Run Selector

5.

Cre-infected cKO MEFs H3K4me3 ChIPseq biological replicate 3

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data: BED
Sample
Accession:
GSM997588
ID:
300997588

SRA Run Selector

6.

Cre-infected cKO MEFs H3Ac ChIPseq biological replicate 3

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data: BED
Sample
Accession:
GSM997587
ID:
300997587

SRA Run Selector

7.

Cre-infected cKO MEFs 10%TI histone ChIPseq biological replicate 3

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data
Sample
Accession:
GSM997586
ID:
300997586

SRA Run Selector

8.

GFP-infected cKO MEFs H3K27me3 ChIPseq biological replicate 3

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data: BED
Sample
Accession:
GSM997585
ID:
300997585

SRA Run Selector

9.

GFP-infected cKO MEFs H3K9me3 ChIPseq biological replicate 3

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data: BED
Sample
Accession:
GSM997584
ID:
300997584

SRA Run Selector

10.

GFP-infected cKO MEFs H3K4me3 ChIPseq biological replicate 3

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data: BED
Sample
Accession:
GSM997583
ID:
300997583

SRA Run Selector

11.

GFP-infected cKO MEFs H3Ac ChIPseq biological replicate 3

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data: BED
Sample
Accession:
GSM997582
ID:
300997582

SRA Run Selector

12.

GFP-infected cKO MEFs 10%TI histone ChIPseq biological replicate 1

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data
Sample
Accession:
GSM997581
ID:
300997581

SRA Run Selector

13.

GFP-infected with 4F cKO MEFs RB ChIPseq

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data: WIG
Sample
Accession:
GSM997580
ID:
300997580

SRA Run Selector

14.

GFP-infected with 4F cKO MEFs 10%TI ChIPseq

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data
Sample
Accession:
GSM997579
ID:
300997579

SRA Run Selector

15.

GFP-infected cKO MEFs RB ChIPseq

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data: WIG
Sample
Accession:
GSM997578
ID:
300997578

SRA Run Selector

16.

GFP-infected cKO MEFs 10%TI ChIPseq

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data
Sample
Accession:
GSM997577
ID:
300997577

SRA Run Selector

17.

Cre-infected with 4F cKO MEFs RNAseq

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data
Sample
Accession:
GSM997576
ID:
300997576

SRA Run Selector

18.

Cre-infected cKO MEFs RNAseq biological replicate 2

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data
Sample
Accession:
GSM997575
ID:
300997575

SRA Run Selector

19.

GFP-infected with 4F cKO MEFs RNAseq

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data
Sample
Accession:
GSM997574
ID:
300997574

SRA Run Selector

20.

GFP-infected cKO MEFs RNAseq

Organism:
Mus musculus
Source name:
conditional KO Rb MEF
Platform:
GPL13112
Series:
GSE40594
Download data
Sample
Accession:
GSM997573
ID:
300997573

SRA Run Selector

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