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Items: 11

1.

The Nucleosome Map of the Mammalian Liver

(Submitter supplied) We report the genome-wide map of nucleosome positions in the mouse liver, with emphasis on transcriptional start sites, CpG islands, Foxa2 binding sites, and their correlation with gene expression. Despite the heterogeneity of liver tissue, we could clearly discern the nucleosome pattern of the predominant liver cell, the hepatocyte. By analyzing nucleosome occupancy and the distributions of heterochromatin protein 1 (Hp1), CBP, and p300 in Foxa1/2-deficient livers we find, surprisingly, that the maintenance of nucleosome position and chromatin structure surrounding Foxa2 binding sites is independent of Foxa1/2.
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL9185
9 Samples
Download data: BED, TAR
Series
Accession:
GSE26729
ID:
200026729
2.

Illumina Genome Analyzer (Mus musculus)

Platform
Accession:
GPL9185
ID:
100009185
3.

C1-p300

Organism:
Mus musculus
Source name:
Control liver
Platform:
GPL9185
Series:
GSE26729
Download data: BED
Sample
Accession:
GSM717569
ID:
300717569
4.

M2-p300

Organism:
Mus musculus
Source name:
Mutant liver
Platform:
GPL9185
Series:
GSE26729
Download data: BED
Sample
Accession:
GSM717568
ID:
300717568
5.

C1-CBP

Organism:
Mus musculus
Source name:
Control liver
Platform:
GPL9185
Series:
GSE26729
Download data: BED
Sample
Accession:
GSM717567
ID:
300717567
6.

M21-CBP

Organism:
Mus musculus
Source name:
Mutant liver
Platform:
GPL9185
Series:
GSE26729
Download data: BED
Sample
Accession:
GSM717566
ID:
300717566
7.

hp1-f

Organism:
Mus musculus
Source name:
Mutant liver
Platform:
GPL9185
Series:
GSE26729
Download data: BED
Sample
Accession:
GSM717565
ID:
300717565
8.

hp1

Organism:
Mus musculus
Source name:
Control liver
Platform:
GPL9185
Series:
GSE26729
Download data: BED
Sample
Accession:
GSM717564
ID:
300717564
9.

FoxA2 Liver5

Organism:
Mus musculus
Source name:
Control liver
Platform:
GPL9185
Series:
GSE26729
Download data: BED
Sample
Accession:
GSM717563
ID:
300717563
10.

FoxA2 Liver4

Organism:
Mus musculus
Source name:
Control liver
Platform:
GPL9185
Series:
GSE26729
Download data: BED
Sample
Accession:
GSM717562
ID:
300717562
11.

Nucleosomal DNA_Mnase-Seq

Organism:
Mus musculus
Source name:
Control liver
Platform:
GPL9185
Series:
GSE26729
Download data: BED, TAR
Sample
Accession:
GSM717558
ID:
300717558
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Supplemental Content

db=gds|term=GSE26729[Accession]|query=1|qty=2|blobid=MCID_6691099149fc8a2325f66015|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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