GSE24685[Accession] - GEO DataSets - NCBI

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Items: 17

Select item 2000246851.

Genome-wide binding of the orphan nuclear receptor TR4 suggests its general role in fundamental biological processes

(Submitter supplied) The orphan nuclear receptor TR4 (human testicular receptor 4 or NR2C2) plays a pivotal role in a variety of biological and metabolic processes. With no known ligand and few known target genes, the mode of TR4 function was unclear. We report the first genome-wide identification and characterization of TR4 in vivo binding. Using chromatin immunoprecipitation followed by high throughput sequencing (ChIP-seq), we identified TR4 binding sites in 4 different human cell types and found that the majority of target genes were shared among different cells. more...

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL9052
15 Samples

Download data: BAM, BED, BIGWIG, TAGALIGN

Series

Accession:: GSE24685

ID:: 200024685

PubMed Full text in PMC Similar studies ENCODE SRA Run Selector

Select item 1000090522.

Illumina Genome Analyzer (Homo sapiens)

Organism:: Homo sapiens

587 Series
7908 Samples

Platform

Accession:: GPL9052

ID:: 100009052

Select item 3006081673.

H3K27me3_K562_ChIP-seq_rep2

Organism:: Homo sapiens

Source name:: chronic myeloid leukemia cell line

Platform:: GPL9052
Series:: GSE24685

Download data: BAM, BIGWIG

Sample

Accession:: GSM608167

ID:: 300608167

SRA Run Selector

Select item 3006081664.

H3K27me3_K562_ChIP-seq_rep1

Organism:: Homo sapiens

Source name:: chronic myeloid leukemia cell line

Platform:: GPL9052
Series:: GSE24685

Download data: BAM

Sample

Accession:: GSM608166

ID:: 300608166

SRA Run Selector

Select item 3006081655.

H3K4me3_K562_ChIP-seq_rep2

Organism:: Homo sapiens

Source name:: chronic myeloid leukemia cell line

Platform:: GPL9052
Series:: GSE24685 GSE28162

Download data: BAM, BIGWIG

Sample

Accession:: GSM608165

ID:: 300608165

SRA Run Selector

Select item 3006081646.

H3K4me3_K562_ChIP-seq_rep1

Organism:: Homo sapiens

Source name:: chronic myeloid leukemia cell line

Platform:: GPL9052
Series:: GSE24685 GSE28162

Download data: BAM

Sample

Accession:: GSM608164

ID:: 300608164

SRA Run Selector

Select item 3006081637.

ELK1_HeLa_ChIP-seq_rep1

Organism:: Homo sapiens

Source name:: cervical carcinoma

Platform:: GPL9052
Series:: GSE24685

Download data: TAGALIGN

Sample

Accession:: GSM608163

ID:: 300608163

SRA Run Selector

Select item 3006081628.

ELK4_HeLa_ChIP-seq_rep2

Organism:: Homo sapiens

Source name:: cervical carcinoma

Platform:: GPL9052
Series:: GSE24685

Download data: BAM, BIGWIG

Sample

Accession:: GSM608162

ID:: 300608162

SRA Run Selector

Select item 3006081619.

ELK4_HeLa_ChIP-seq_rep1

Organism:: Homo sapiens

Source name:: cervical carcinoma

Platform:: GPL9052
Series:: GSE24685

Download data: BAM

Sample

Accession:: GSM608161

ID:: 300608161

SRA Run Selector

Select item 30060816010.

TR4_HeLa_ChIP-seq_rep2

Organism:: Homo sapiens

Source name:: cervical carcinoma

Platform:: GPL9052
Series:: GSE24685

Download data: BED, TAGALIGN

Sample

Accession:: GSM608160

ID:: 300608160

SRA Run Selector

Select item 30060815911.

TR4_HeLa_ChIP-seq_rep1

Organism:: Homo sapiens

Source name:: cervical carcinoma

Platform:: GPL9052
Series:: GSE24685

Download data: TAGALIGN

Sample

Accession:: GSM608159

ID:: 300608159

SRA Run Selector

Select item 30060815812.

TR4_GM_ChIP-seq_rep2

Organism:: Homo sapiens

Source name:: lymphoblastoid cell line

Platform:: GPL9052
Series:: GSE24685

Download data: BED, TAGALIGN

Sample

Accession:: GSM608158

ID:: 300608158

SRA Run Selector

Select item 30060815713.

TR4_GM_ChIP-seq_rep1

Organism:: Homo sapiens

Source name:: lymphoblastoid cell line

Platform:: GPL9052
Series:: GSE24685

Download data: TAGALIGN

Sample

Accession:: GSM608157

ID:: 300608157

SRA Run Selector

Select item 30060815614.

TR4_HepG2_ChIP-seq_rep2

Organism:: Homo sapiens

Source name:: hepatocellular carcinoma

Platform:: GPL9052
Series:: GSE24685

Download data: BED, TAGALIGN

Sample

Accession:: GSM608156

ID:: 300608156

SRA Run Selector

Select item 30060815515.

TR4_HepG2_ChIP-seq_rep1a

Organism:: Homo sapiens

Source name:: hepatocellular carcinoma

Platform:: GPL9052
Series:: GSE24685

Download data: TAGALIGN

Sample

Accession:: GSM608155

ID:: 300608155

SRA Run Selector

Select item 30060815416.

TR4_K562_ChIP-seq_rep2

Organism:: Homo sapiens

Source name:: chronic myeloid leukemia cell line

Platform:: GPL9052
Series:: GSE24685

Download data: BED, TAGALIGN

Sample

Accession:: GSM608154

ID:: 300608154

SRA Run Selector

Select item 30060815317.

TR4_K562_ChIP-seq_rep1

Organism:: Homo sapiens

Source name:: chronic myeloid leukemia cell line

Platform:: GPL9052
Series:: GSE24685

Download data: TAGALIGN

Sample

Accession:: GSM608153

ID:: 300608153

SRA Run Selector

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